View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14874_high_4 (Length: 319)
Name: NF14874_high_4
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 6062623 - 6062926
Alignment:
| Q |
16 |
gttaagatatccattcaatctcttttctttccatttttcctaaatgagtaattaagcttgtgtcaatttgtcnnnnnnnnnnnnn--------gattaat |
107 |
Q |
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| T |
6062623 |
gttaagatatccattcaatctcttttctttccatttttcctaaatgagtaattaagcttgtgtcaatttgtcaaaaaaaaaaaaaaaaaaaaagattaat |
6062722 |
T |
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| Q |
108 |
taaacttgtgtcaatatagcaaataatataacaacactcaataaactatatggatatcaatttgaggaagtagttcagagagacaatgatcaatgtattg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6062723 |
caaacttgtgtcaatatagcaaataatataacaacactcaataaactatatggatatcaatttgaggaagtagttcagagagacaatgatcaatgtattg |
6062822 |
T |
|
| Q |
208 |
gataacaatgtttgaaatagtgtccctctagggatcacttgttccccattagaaattccccagcattcatgtaataatatgatttttgacacaatttgag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6062823 |
gataacaatgtttgaaatagtgtccctctagggatcacttgttccccattagaaattccccagcattcatgtaataatatgatttttgacacaatttgag |
6062922 |
T |
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| Q |
308 |
atct |
311 |
Q |
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|||| |
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| T |
6062923 |
atct |
6062926 |
T |
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