View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14874_high_5 (Length: 298)
Name: NF14874_high_5
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 43588314 - 43588026
Alignment:
| Q |
7 |
aaatccaaatcaaccatcctcccaaagaaacaagacgcatattgcagaattaaatgttattaaaatgagggagaggacccagtattatttattattgaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
43588314 |
aaatccaaatcaaccatcctcccaaagaaacaagacacatattgcagaattaaatgttattaaaatgagggagagaacccagtattatttattattaaag |
43588215 |
T |
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| Q |
107 |
aatattttccctcccctaccttcacggcttcataaa--atagcctcagatacaaagctagctacttgtcaaaaggatcgatccagttctcaatgggtact |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43588214 |
aatattttccctcccctaccttcacggcttcataaactatagcctcagatacaaagctagctacttgtcaaaaggatcgatccagttctcgatgggtact |
43588115 |
T |
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| Q |
205 |
gtcaccttataaatttccttaagagaccgatatttcttcatcttctttcgtctaaaaatctccttgacctccttattattggccctttg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588114 |
gtcaccttataaatttccttaagagaccgatatttcttcatcttctttcgtctaaaaatctccttgacctccttattattggccctttg |
43588026 |
T |
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