View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14874_low_1 (Length: 476)
Name: NF14874_low_1
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 46039945 - 46040408
Alignment:
| Q |
7 |
agagcatattggattctaactcttgatcacatgcgaacggaaattaggatccaatagtgatattattaacattttgacgtgcttgtgatcaatttaaggt |
106 |
Q |
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| T |
46039945 |
agagcatattagattctaactcttgatcacatgtgaacggaaattaggatccaatagtgatattattaacattttgacgtgcttgtgagcaatttaaggt |
46040044 |
T |
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| Q |
107 |
gtttaaagagcaattttcctaaacattggacacgatactctctttttggacaagaaaatcttgatccgtgcaatttttaaacttggcatccattccaaac |
206 |
Q |
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| T |
46040045 |
gtttaaagagcaattttcctaaacattggacacgatactctctttttggacaagaaaatcttgatccgtgcaatttttaaacttggcatccattccaaac |
46040144 |
T |
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| Q |
207 |
taaaataatgcaagttacaataaccaacgttaatcatcaattcaccacccttataaaattctaatttaatcc-----taaaattacaaggatagtacaac |
301 |
Q |
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| T |
46040145 |
taaaataatgcaagttacaataaccaacgttaatcatcaattcaccacccttataaaattctaatttaatcctaaaataaaattacaaggatagtacaac |
46040244 |
T |
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| Q |
302 |
aataccatgattaaattaataccaagaatccaagaccagcatttatcgtgagtttcccagaaagcacaagactattagcagtgaccctaacttaatataa |
401 |
Q |
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| T |
46040245 |
aataccatgattaaattaataccaagaatccaagactagcatttatcgtgagtttcccagaaagcacaagactactagcagtgaccctaacttaatataa |
46040344 |
T |
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| Q |
402 |
taatatcatatagccaccgacgcgctctatgtgccaaaccttgcaaaaggcgcatcccattcat |
465 |
Q |
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| T |
46040345 |
taatatcatatagccaccgacgcgctttatgttccaaacctttcaaaaggcacatcccattcat |
46040408 |
T |
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