View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14874_low_6 (Length: 259)
Name: NF14874_low_6
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 5823121 - 5822903
Alignment:
| Q |
40 |
aatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttc |
139 |
Q |
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| T |
5823121 |
aatagcagcatacatagagacagacgaatgtgtagaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttc |
5823022 |
T |
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| Q |
140 |
acaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5823021 |
acaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaacaattgtttgttaa |
5822922 |
T |
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| Q |
240 |
tgctactattttatttacca |
259 |
Q |
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||| |||||||||||||||| |
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| T |
5822921 |
tgc-actattttatttacca |
5822903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 5828756 - 5828974
Alignment:
| Q |
40 |
aatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttc |
139 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828756 |
aatagcagcatacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttc |
5828855 |
T |
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| Q |
140 |
acaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttac |
239 |
Q |
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| T |
5828856 |
acaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaagacttgtttgttaa |
5828955 |
T |
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| Q |
240 |
tgctactattttatttacca |
259 |
Q |
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||| |||||||||||||||| |
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| T |
5828956 |
tgc-actattttatttacca |
5828974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 5832989 - 5832814
Alignment:
| Q |
50 |
tacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagc |
149 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | |
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| T |
5832989 |
tacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaac |
5832890 |
T |
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| Q |
150 |
tttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaa |
225 |
Q |
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| T |
5832889 |
tttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaa |
5832814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 24038610 - 24038434
Alignment:
| Q |
49 |
atacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaag |
148 |
Q |
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||||||||||||||| ||||||||| |||||||||| ||||| || | || ||| || ||||| || ||||| || ||||||| | |||||| ||| |
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| T |
24038610 |
atacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaattttgtcggaatttcttccgatgcattgcttgagccacaattcacagccaaa |
24038511 |
T |
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| Q |
149 |
ctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaa |
225 |
Q |
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|||||||| ||||||||| | || || ||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24038510 |
ctttgttcatcatcttgttaccaaaattgccccaatattgttgacctttacttcaatttggctgctggggaaggtaa |
24038434 |
T |
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