View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14874_low_8 (Length: 213)
Name: NF14874_low_8
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_low_8 |
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| [»] chr6 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 17411727 - 17411512
Alignment:
| Q |
1 |
ctgcaattcaaacttgactacagttgacttaggaacaacttcattatca---ctatgcacagaatcattaaccattcctccttgatgaccagggatgaca |
97 |
Q |
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| T |
17411727 |
ctgcaattcaaacttgactacagttgacttaggaacaacttcattatcatcactatgcacagaatcattaaccattcctccttgatgaccagggatgaca |
17411628 |
T |
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| Q |
98 |
acagtccttatgcacttcatgttatagggtccaannnnnnnccaacagacattcaattcttgcagagctttcaggacgtcagtcattatttcacgaggtt |
197 |
Q |
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| T |
17411627 |
acagtccatatgcacttcatgttatagggtccaatttttttccaacagacattcaattcttgcagagctttgaggacgtcagtcattatttcacgaggtt |
17411528 |
T |
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| Q |
198 |
gggctcgagactatca |
213 |
Q |
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| T |
17411527 |
gggctcgagactatca |
17411512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 17407219 - 17407049
Alignment:
| Q |
43 |
attatcactatgcacagaatcattaaccattcctccttgatgaccagggatgacaacagtccttatgcacttcatgttatagggtccaannnnnnnccaa |
142 |
Q |
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| T |
17407219 |
attattactatgcacagaattgttatccattcctccatgatgaccagggatgataacagcccatctgcacttcatgttatagggtccaatttttttccaa |
17407120 |
T |
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| Q |
143 |
cagacattcaattcttgcagagctttcaggacgtcagtcattatttcacgaggttgggctcgagactatca |
213 |
Q |
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| T |
17407119 |
cagacactcaattcttgcagagctttaaggacttcggtcattatttcacgaggttgggctcgagactatca |
17407049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 4050596 - 4050733
Alignment:
| Q |
72 |
ttcctccttgatgaccagggatgacaacagtccttatgcacttcatgttatagggtccaannnnnnnccaacagacattcaattcttgcagagctttcag |
171 |
Q |
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| T |
4050596 |
ttcctccatgatgaccagggatgccaacggcccatctgcacttcatgttatagggtccaatttttttccaacagacattcagttcttgcagagctttaag |
4050695 |
T |
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| Q |
172 |
gacgtcagtcattatttcacgaggttgggctcgagact |
209 |
Q |
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| T |
4050696 |
gacttcggtcattatttcacgaggctgcgctcgagact |
4050733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17407291 - 17407247
Alignment:
| Q |
1 |
ctgcaattcaaacttgactacagttgacttaggaacaacttcatt |
45 |
Q |
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| T |
17407291 |
ctgcaactcaaacttgactacagttgacttaggaacaacgtcatt |
17407247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4050534 - 4050575
Alignment:
| Q |
1 |
ctgcaattcaaacttgactacagttgacttaggaacaacttc |
42 |
Q |
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| T |
4050534 |
ctgcagttcaaacttgactacagttgtcttaggaacagcttc |
4050575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 45863373 - 45863521
Alignment:
| Q |
65 |
ttaaccattcctccttgatgaccagggatgacaacagtccttatgcacttcatgttatagggtccaannnnnnnccaacagacattcaattcttgcagag |
164 |
Q |
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| T |
45863373 |
ttaaccattcctccatgatgaccaaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagag |
45863472 |
T |
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| Q |
165 |
ctttcaggacgtcagtcattatttcacgaggttgggctcgagactatca |
213 |
Q |
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| T |
45863473 |
ctttaaggacctcagtcattatctcatgaggttgggcttgagactatca |
45863521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2784231 - 2784274
Alignment:
| Q |
1 |
ctgcaattcaaacttgactacagttgacttaggaacaacttcat |
44 |
Q |
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| T |
2784231 |
ctgcacttcaaacttgactacacttaacttaggaacaacttcat |
2784274 |
T |
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