View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_high_11 (Length: 345)
Name: NF14875_high_11
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 29322885 - 29323028
Alignment:
| Q |
187 |
attattagaaattgttctaaagaaaaccaaagcaaaaatattattaaaaatgaatgcttacacgataaagaggactatctttggagagaaagtttcccat |
286 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
29322885 |
attattagaaattgttcaagagaaaaccaaagcaaaaatattattaaaaatgaaagcttaaacaataaagaggactatctttggagagaaagtttccctt |
29322984 |
T |
|
| Q |
287 |
tccactgcaacattttatcaaacacatagtatgcatatctaaaa |
330 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29322985 |
tccactgcaacattttatcaaacacatagcgtgcatatctaaaa |
29323028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 23537278 - 23537401
Alignment:
| Q |
207 |
agaaaaccaaagcaaaaatattattaaaaatgaatgcttacacgataaagaggactatctttggagagaaagtttcccattccactgcaacattttatca |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
23537278 |
agaaaaccaaagcaaaaatattattaaaaatgaaagcttactcgatagagaggactatctttggaaagaaagtttcccgttccactgcaacattttatca |
23537377 |
T |
|
| Q |
307 |
aacacatagtatgcatatctaaaa |
330 |
Q |
| |
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| |||| |||| ||||||||||| |
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| T |
23537378 |
gaaacatggtatacatatctaaaa |
23537401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 23537485 - 23537556
Alignment:
| Q |
209 |
aaaaccaaagcaaaaatattattaaaaa--tgaatgcttacacgataaagaggactatctttggagagaaag |
278 |
Q |
| |
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|||| ||||||||||||||||| ||||| |||| |||||| | | |||||| |||||||||||||||||| |
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| T |
23537485 |
aaaatcaaagcaaaaatattataaaaaaagtgaaagcttacgtggtcaagagggctatctttggagagaaag |
23537556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 10645170 - 10645293
Alignment:
| Q |
207 |
agaaaaccaaagcaaaaatattattaaaaatgaatgcttacacgataaagaggactatctttggagagaaagtttcccattccactgcaacattttatca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10645170 |
agaaaaccaaagcaaaaatattattaaaaatgaaagcttacttgatagagaggactaactttggagagaaagtttcccattccactacaacattttatca |
10645269 |
T |
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| Q |
307 |
aacacatagtatgcatatctaaaa |
330 |
Q |
| |
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| |||| |||| ||||||||||| |
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| T |
10645270 |
gaaacatggtatacatatctaaaa |
10645293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 43468664 - 43468787
Alignment:
| Q |
207 |
agaaaaccaaagcaaaaatattattaaaaatgaatgcttacacgataaagaggactatctttggagagaaagtttcccattccactgcaacattttatca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43468664 |
agaaaaccaaagcaaaaatattattaaaaatgaaagcttacttgatagagaggactaactttggagagaaagtttcccattccactacaacattttatca |
43468763 |
T |
|
| Q |
307 |
aacacatagtatgcatatctaaaa |
330 |
Q |
| |
|
| |||| |||| ||||||||||| |
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|
| T |
43468764 |
gaaacatggtatacatatctaaaa |
43468787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 46567581 - 46567457
Alignment:
| Q |
207 |
agaaaaccaaagcaaaaatattattaaaaatgaatgcttacacgataaagaggactatctttggagagaaagtttcccattccactgcaacattttatca |
306 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46567581 |
agaaaatcaaagcaaaaatattattaaaaatgaaagcttacttgatagagaggactaactttggagagaaagtttcccattccactacaacattttatca |
46567482 |
T |
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| Q |
307 |
aacacatagtatgcatatctaaaat |
331 |
Q |
| |
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| |||| |||| |||||||||||| |
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| T |
46567481 |
gaaacatggtatacatatctaaaat |
46567457 |
T |
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