View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_high_17 (Length: 277)
Name: NF14875_high_17
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 37817308 - 37817047
Alignment:
| Q |
16 |
atcaagtaataaggttgcgtaaaaagaaaaagacgtctatttgctagcttaaaaaggtataccgaggacatatgagagctacctgttgggtttaaatgtg |
115 |
Q |
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| T |
37817308 |
atcaagtaacaaggttgcgtaaaaagaaaaagacgtctatttgctagcttaaaaaggtataccgaggacatatgagagctacctgttggatttaaatgtg |
37817209 |
T |
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| Q |
116 |
gatgattagtcctacattgattatgaataatttgatgttagatatataagagaggtgaaccatatatctaacactttaaattttttgatggaaatgttgc |
215 |
Q |
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| T |
37817208 |
gatgattagttgtacattgattatgaataatttgatgttagatatataagagaggtgaaccatatatctaacactttaagatttttgatgaaaatgttgc |
37817109 |
T |
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| Q |
216 |
tttcgcgtctctcatactccgtaacaagtgataacaaaacaaggtggggggagaaaaacttc |
277 |
Q |
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| T |
37817108 |
tttcgcgtctctcatactccgtaacaagtgatatcaaaacaaggtggggggagaaaaacttc |
37817047 |
T |
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