View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_high_20 (Length: 238)
Name: NF14875_high_20
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 42492071 - 42491851
Alignment:
| Q |
17 |
aaatccacaagatttacatacacaattgtgaacataacgcagcaatttccgttaccttattgcaatagctttctcgaggagtggtcttaaatggaaattt |
116 |
Q |
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| T |
42492071 |
aaatccacaagatttacatacacaattgtgaacataacgcagcaatttccgttaccttattgcaatagctttctcgaggagtggtcttaaatggaaattt |
42491972 |
T |
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| Q |
117 |
gaggcataaatgtcttgagtgaggataatctcttagggctatctgaatgatcatgaaccaggnnnnnnnttgaactttaaatttgtatgctgttttttag |
216 |
Q |
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| T |
42491971 |
gaggcataaatgtcttgagtgaggataatctcttagggctatctgaatgaacatgaaccaggaaaaaaattgaactttaaatttgtatgctg-tttttag |
42491873 |
T |
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| Q |
217 |
tgcaaaacagcatcaaagcacc |
238 |
Q |
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| T |
42491872 |
tgcaaaacagcatcaaagcacc |
42491851 |
T |
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