View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14875_high_27 (Length: 210)

Name: NF14875_high_27
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14875_high_27
NF14875_high_27
[»] chr5 (5 HSPs)
chr5 (86-200)||(25955944-25956058)
chr5 (86-200)||(42250117-42250231)
chr5 (85-200)||(38280257-38280372)
chr5 (86-200)||(1501353-1501467)
chr5 (86-193)||(7886356-7886463)
[»] chr7 (10 HSPs)
chr7 (90-200)||(2286463-2286573)
chr7 (86-200)||(25185917-25186031)
chr7 (86-200)||(496684-496798)
chr7 (86-200)||(11765708-11765822)
chr7 (86-200)||(48057683-48057797)
chr7 (92-200)||(23844642-23844750)
chr7 (89-200)||(7527248-7527359)
chr7 (86-200)||(42535198-42535312)
chr7 (86-200)||(31427244-31427360)
chr7 (86-200)||(40855135-40855250)
[»] chr4 (3 HSPs)
chr4 (86-200)||(52055132-52055246)
chr4 (86-200)||(1158239-1158353)
chr4 (105-185)||(49866670-49866750)
[»] chr3 (6 HSPs)
chr3 (90-200)||(47940831-47940941)
chr3 (89-200)||(49786397-49786508)
chr3 (86-185)||(29836769-29836867)
chr3 (86-185)||(8152978-8153079)
chr3 (86-200)||(8436880-8436994)
chr3 (91-186)||(48778971-48779066)
[»] chr8 (2 HSPs)
chr8 (86-200)||(4076928-4077042)
chr8 (85-200)||(3780343-3780458)
[»] chr6 (1 HSPs)
chr6 (90-200)||(33594503-33594613)
[»] chr1 (5 HSPs)
chr1 (86-200)||(20186825-20186939)
chr1 (86-200)||(30339637-30339751)
chr1 (86-200)||(51787273-51787387)
chr1 (86-198)||(43740393-43740505)
chr1 (91-149)||(9673004-9673062)
[»] chr2 (4 HSPs)
chr2 (86-200)||(13922186-13922300)
chr2 (88-176)||(11828960-11829048)
chr2 (17-84)||(2354650-2354717)
chr2 (30-84)||(2353013-2353067)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 25956058 - 25955944
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  25956058 agtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttc 25955959  T
Q  186 cttttcattcatctc 200  Q
    |||||||| ||||||    
T  25955958 cttttcatccatctc 25955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 42250117 - 42250231
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||    
T  42250117 agtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctcttc 42250216  T
Q  186 cttttcattcatctc 200  Q
    |||||||| ||||||    
T  42250217 cttttcatccatctc 42250231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 38280372 - 38280257
Alignment:
Q  85 aagtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctctt 184  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||| ||||||    
T  38280372 aagtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 38280273  T
Q  185 ccttttcattcatctc 200  Q
    |  |||||| ||||||    
T  38280272 ctctttcatccatctc 38280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 1501467 - 1501353
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||| |  ||||||||||| | ||||||||| |||||||    
T  1501467 agtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctcttc 1501368  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  1501367 tctttcatccatctc 1501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 7886356 - 7886463
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||| |||||| ||  ||||||| |||||||||||||||||||||||||||||||||||| || |||| | |||||| | | ||||| |||||||    
T  7886356 agtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctcttc 7886455  T
Q  186 cttttcat 193  Q
    | ||||||    
T  7886456 cctttcat 7886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 2286463 - 2286573
Alignment:
Q  90 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttccttt 189  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  2286463 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttccttt 2286562  T
Q  190 tcattcatctc 200  Q
    |||| ||||||    
T  2286563 tcatccatctc 2286573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 25186031 - 25185917
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| | |||||||    
T  25186031 agtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctcttc 25185932  T
Q  186 cttttcattcatctc 200  Q
    |||||||| ||||||    
T  25185931 cttttcatccatctc 25185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 496684 - 496798
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||||  || ||||||||||||||||||||||| |||||||    
T  496684 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctcttc 496783  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  496784 tctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 11765708 - 11765822
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||  || ||| ||||||||||||||||||| |||||||    
T  11765708 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctcttc 11765807  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  11765808 tctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 48057797 - 48057683
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| |||||||||||||||||||| | |||||| |||||| ||||||||||||  || ||||||||||||||||||||||| |||||||    
T  48057797 agtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 48057698  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  48057697 tctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 23844642 - 23844750
Alignment:
Q  92 gatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttccttttc 191  Q
    |||||||||||| ||||||||  |||||||||| ||| ||||||| ||||||||||||| || |||||||| |||||||||||||| |||||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  192 attcatctc 200  Q
    || ||||||    
T  23844742 atccatctc 23844750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 7527359 - 7527248
Alignment:
Q  89 ggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttcctt 188  Q
    ||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||| ||  ||    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctctttttttt 7527260  T
Q  189 ttcattcatctc 200  Q
    ||||| ||||||    
T  7527259 ttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 42535312 - 42535198
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||| ||||| ||| |||| |||||||| |||||||||||||||||||||| ||||||||||||  || | || | |||||||||||||||| |||||||    
T  42535312 agtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctcttc 42535213  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  42535212 tctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 31427360 - 31427244
Alignment:
Q  86 agtggtgatacatgcacacccataggtg--gcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctct 183  Q
    |||||||||||||||||| |||||||||  ||||||| | |||||||||| || ||| ||||||||| ||   ||||| ||||||||||||||| |||||    
T  31427360 agtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctct 31427261  T
Q  184 tccttttcattcatctc 200  Q
    ||| | |||| ||||||    
T  31427260 tccctctcatccatctc 31427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 40855250 - 40855135
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatat-gacctagaccccacaaacactttgtttctctt 184  Q
    |||| |||| |||||| | ||||| |||| ||| ||||||||||||| ||||||||||||||| | | |  ||||||| |||||||||||||| ||| ||    
T  40855250 agtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctctttt 40855151  T
Q  185 ccttttcattcatctc 200  Q
    || |||||||||||||    
T  40855150 ccctttcattcatctc 40855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 52055246 - 52055132
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  52055246 agtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttc 52055147  T
Q  186 cttttcattcatctc 200  Q
    |||||||| ||||||    
T  52055146 cttttcatccatctc 52055132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 1158353 - 1158239
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||| ||||||||||||| | ||||  ||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||| |||||||    
T  1158353 agtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctcttc 1158254  T
Q  186 cttttcattcatctc 200  Q
    | |||||||||||||    
T  1158253 cctttcattcatctc 1158239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 49866670 - 49866750
Alignment:
Q  105 ccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||| |||||| ||||||||| |||||||| ||||||||| |||| |||||| || ||||||||||| |||||||    
T  49866670 ccataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttc 49866750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 47940831 - 47940941
Alignment:
Q  90 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttccttt 189  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  47940831 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttccttt 47940930  T
Q  190 tcattcatctc 200  Q
    |||| ||||||    
T  47940931 tcatccatctc 47940941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 49786397 - 49786508
Alignment:
Q  89 ggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttcctt 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||| |||||||  |    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 49786496  T
Q  189 ttcattcatctc 200  Q
    ||||||||||||    
T  49786497 ttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 29836867 - 29836769
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||| |||||||    
T  29836867 agtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctcttc 29836769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 8152978 - 8153079
Alignment:
Q  86 agtggtgatacat--gcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctct 183  Q
    |||||||||||||  ||||||| ||||||||||||||||| |||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||    
T  8152978 agtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctct 8153077  T
Q  184 tc 185  Q
    ||    
T  8153078 tc 8153079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 8436994 - 8436880
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||| ||| ||| || |||||  || | ||||||||||||||||||||| |||||||    
T  8436994 agtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctcttc 8436895  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  8436894 tctttcatccatctc 8436880  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 48779066 - 48778971
Alignment:
Q  91 tgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttcc 186  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||| ||| ||||||||| ||  |||||| ||| ||||||||| | ||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttcc 48778971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 4077042 - 4076928
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||||    
T  4077042 agtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctcttc 4076943  T
Q  186 cttttcattcatctc 200  Q
    |||||||| ||||||    
T  4076942 cttttcatccatctc 4076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 3780458 - 3780343
Alignment:
Q  85 aagtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctctt 184  Q
    |||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |  |||| |||| | ||||||||||| ||||||    
T  3780458 aagtagtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctctt 3780359  T
Q  185 ccttttcattcatctc 200  Q
    || |||||| ||||||    
T  3780358 ccctttcatccatctc 3780343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 33594613 - 33594503
Alignment:
Q  90 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttccttt 189  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||    
T  33594613 gtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctcttccttt 33594514  T
Q  190 tcattcatctc 200  Q
    |||| ||||||    
T  33594513 tcatccatctc 33594503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 20186939 - 20186825
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  || |||||| |||||||||||||||| |||||||    
T  20186939 agtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctcttc 20186840  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  20186839 tctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 30339637 - 30339751
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||  || ||||||||||||||||||||||| |||||||    
T  30339637 agtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 30339736  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  30339737 tctttcatccatctc 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 51787273 - 51787387
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||  ||  |||||||||||||||||||||| |||||||    
T  51787273 agtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctcttc 51787372  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  51787373 tctttcatgcatctc 51787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 43740505 - 43740393
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    ||||||||| |||| ||| |||||| |  ||| ||||||||||||||||||||||||||||| || || |||| ||| |||||||||||||| |||||||    
T  43740505 agtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctcttc 43740406  T
Q  186 cttttcattcatc 198  Q
    ||| |||| ||||    
T  43740405 cttatcatccatc 43740393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 9673062 - 9673004
Alignment:
Q  91 tgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgaca 149  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgaca 9673004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 13922186 - 13922300
Alignment:
Q  86 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttgtttctcttc 185  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||  || ||||||||||||||||||||||| |||||||    
T  13922186 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 13922285  T
Q  186 cttttcattcatctc 200  Q
      |||||| ||||||    
T  13922286 tctttcatccatctc 13922300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 11828960 - 11829048
Alignment:
Q  88 tggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgacatatgacctagaccccacaaacactttg 176  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 2354717 - 2354650
Alignment:
Q  17 aattccttcttcatttattgttattaacttctgaataaaattgtatttttagtttcaattttatcaat 84  Q
    |||||||||||| ||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  2354717 aattccttcttcttttatcgttattaacttttgtataaaatagtatttttagtttcaattttatcaat 2354650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 2353067 - 2353013
Alignment:
Q  30 tttattgttattaacttctgaataaaattgtatttttagtttcaattttatcaat 84  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  2353067 tttattgttgttaacttctgaataaaatggtatttttagtttcaattttatcaat 2353013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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