View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_high_29 (Length: 204)
Name: NF14875_high_29
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 35690969 - 35690806
Alignment:
| Q |
18 |
aaaggtatcgtgtatgaagatatatatgtacgttatttgtcaagattgagagatgatttgcgtataaaggaactcgttccaaatgtctggtaagcctggt |
117 |
Q |
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| T |
35690969 |
aaaggtatcgtgtatgaagatatatatgtacgttatttgtcaagattgagagatgatttgcgtataaaggaactcgttccaaatgtctggtaagcctggt |
35690870 |
T |
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| Q |
118 |
aaacaccaatgaatacaatctgcataagtagttggatcagcttgttgttcaggtgttagcatct |
181 |
Q |
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| T |
35690869 |
aaacaccaatgaatacaatctgcataagtagttggatcagcttgttgttcaggtgttagcatct |
35690806 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 31823411 - 31823342
Alignment:
| Q |
79 |
gtataaaggaactcgttccaaatgtctggtaagcctggtaaacaccaatgaatacaatctgcataagtag |
148 |
Q |
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|||||||| ||||| ||||| | || ||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
31823411 |
gtataaagcaactcattccatgtatcaggtaaccctggtaaacaccaatggatacaatctgcataagtag |
31823342 |
T |
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