View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14875_high_5 (Length: 567)

Name: NF14875_high_5
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14875_high_5
NF14875_high_5
[»] chr4 (9 HSPs)
chr4 (172-451)||(34967090-34967370)
chr4 (172-449)||(27742651-27742928)
chr4 (194-453)||(54207233-54207492)
chr4 (194-450)||(9117443-9117699)
chr4 (1-165)||(34967421-34967587)
chr4 (1-165)||(27742434-27742600)
chr4 (5-165)||(9117755-9117935)
chr4 (5-165)||(54207548-54207728)
chr4 (370-427)||(25476960-25477017)
[»] chr3 (9 HSPs)
chr3 (194-453)||(46920103-46920362)
chr3 (194-451)||(11031561-11031818)
chr3 (194-449)||(18319605-18319860)
chr3 (172-451)||(52126190-52126479)
chr3 (450-553)||(34705501-34705604)
chr3 (1-108)||(52126011-52126118)
chr3 (5-165)||(18319916-18320096)
chr3 (5-165)||(46920418-46920598)
chr3 (5-165)||(11031325-11031505)
[»] chr7 (5 HSPs)
chr7 (194-451)||(16849879-16850136)
chr7 (172-447)||(31738741-31739026)
chr7 (1-108)||(31738562-31738669)
chr7 (5-78)||(16849648-16849721)
chr7 (58-165)||(16849719-16849823)
[»] chr1 (4 HSPs)
chr1 (194-453)||(38006996-38007255)
chr1 (172-451)||(51083358-51083647)
chr1 (1-108)||(51083719-51083826)
chr1 (5-165)||(38007311-38007491)
[»] chr8 (4 HSPs)
chr8 (194-448)||(11465584-11465838)
chr8 (194-449)||(3428480-3428735)
chr8 (5-165)||(3428791-3428971)
chr8 (5-165)||(11465894-11466074)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 172 - 451
Target Start/End: Complemental strand, 34967370 - 34967090
Alignment:
Q  172 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggt-ggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34967370 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggttggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaat 34967271  T
Q  271 aaaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttac 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967270 aaaacatcccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttac 34967171  T
Q  371 cttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 451  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34967170 cttctaccaaacatgagaaagtgcattcccatcctcatattcccaggaataaattttataacctggaaacaaacaccccct 34967090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 172 - 449
Target Start/End: Original strand, 27742651 - 27742928
Alignment:
Q  172 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaata 271  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27742651 aatcaacacgttcagtgtattgagaaattaattggtagttgaaaatacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaata 27742750  T
Q  272 aaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttacc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  27742751 aaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcatgggtataatctgttcccaggtatatttttcttttacc 27742850  T
Q  372 ttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 449  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27742851 ttctaccaaacatgggaaagtgcattcccatcctcatattcccaagaataaattttataacctggaaacaaacacccc 27742928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 194 - 453
Target Start/End: Complemental strand, 54207492 - 54207233
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54207492 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 54207393  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207392 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 54207293  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 453  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  54207292 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccctta 54207233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 194 - 450
Target Start/End: Complemental strand, 9117699 - 9117443
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9117699 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 9117600  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9117599 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 9117500  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccc 450  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9117499 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccc 9117443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 34967587 - 34967421
Alignment:
Q  1 attctcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967587 attctcattataacttgaagcatttcaaaatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 34967488  T
Q  101 aatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||  |||||       |||||||||||||| ||||||||||||||| |||||||||||||    
T  34967487 aatagacacataaatatttttttgcacaaaccaaaaaaaacataaagaaataatagatggattacat 34967421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 27742434 - 27742600
Alignment:
Q  1 attctcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 100  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27742434 attctcattataacttgaagcatttcaaaatacatcataaaataaaattatgttttcatatatttgattgatagaatagaacaatattgttgaaaacttg 27742533  T
Q  101 aatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||  |||||       |||||||||||||||||||||||||||||| |||||||||||||    
T  27742534 aatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatggattacat 27742600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 9117935 - 9117755
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgatt------------------gatagaatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||                  |||| ||||||||||||    
T  9117935 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgataaaatatagttgattgatataatagaacaata 9117836  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    ||||||||||||| |||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  9117835 ttgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 9117755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 54207728 - 54207548
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgatt------------------gatagaatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||                  |||| ||||||||||||    
T  54207728 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgataaaatatagttgattgatataatagaacaata 54207629  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    ||||||||||||| |||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  54207628 ttgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 54207548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 25477017 - 25476960
Alignment:
Q  370 ccttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaatttt 427  Q
    |||||||||||||||||||| ||| ||||| || | |||||||||| |||||||||||    
T  25477017 ccttctaccaaacatgggaatgtgtattcctattcacatattcccatgaataaatttt 25476960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 194 - 453
Target Start/End: Complemental strand, 46920362 - 46920103
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920362 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 46920263  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920262 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 46920163  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 453  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46920162 cattcccatcctcatattcccaggaataaattttataacatggaaacaaacaccccctta 46920103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 194 - 451
Target Start/End: Original strand, 11031561 - 11031818
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11031561 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11031660  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031661 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 11031760  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 451  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  11031761 cattcccatcctcatattcctagaaataaattttataacctggaaacaaacaccccct 11031818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 194 - 449
Target Start/End: Complemental strand, 18319860 - 18319605
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18319860 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcatttctaggaataaaacattccaactcctttttca 18319761  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319760 tgggaataaaaatagggagatcatgggttaaaaaatttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 18319661  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 449  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18319660 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacacccc 18319605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 172 - 451
Target Start/End: Original strand, 52126190 - 52126479
Alignment:
Q  172 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 262  Q
    |||||||||||||| || || || ||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||   |||||||    
T  52126190 aatcaacacgttcattgcatggaaaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcaagtagcaaggcactagtcattc 52126289  T
Q  263 ttaggaataaaa-cattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatattt 361  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52126290 ctaggaataaaaacattccaactcctctttcatgggaataaaaatgggaagatcatgggttaaaaattttcctgggtataatttgtttccaggtatattt 52126389  T
Q  362 ttcttttaccttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 451  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  52126390 ttcttgtaccttctaccaaacatgggaaagtgcattcccatcctcatattccaaggaataaattttataacctggaaacaaacaccccct 52126479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 450 - 553
Target Start/End: Complemental strand, 34705604 - 34705501
Alignment:
Q  450 cttatgttttatggtttattttgacgcttgaatgatctttgtgtaattgtcatttactctacggtttctgattgtaatatacgaacattgtagtgcttaa 549  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34705604 cttatgttttatggtttattttgacacttgaatgatccttgtgtaattgtcatttactctaaggtttctgattgtaatatacgaacattgtagtgcttaa 34705505  T
Q  550 tctg 553  Q
    ||||    
T  34705504 tctg 34705501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 52126011 - 52126118
Alignment:
Q  1 attctcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||    
T  52126011 attctgattataacttgaagcatttcaaaatacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttg 52126110  T
Q  101 aatagaca 108  Q
    ||||||||    
T  52126111 aatagaca 52126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 18320096 - 18319916
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatag------------------aatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||||    
T  18320096 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgatagaatatagttgattgatataatagaacaata 18319997  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||||||||||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  18319996 ttgttgaaaacttgaatagacacataaatatgtttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 18319916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 46920598 - 46920418
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatag------------------aatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||||    
T  46920598 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgatagaatatagttgattgttataatagaacaata 46920499  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||||||||||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  46920498 ttgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 46920418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 11031325 - 11031505
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttc------------------atatagttgattgatagaatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||                  |||||||||||||||| ||||||||||||    
T  11031325 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgataaaatatagttgattgatataatagaacaata 11031424  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    ||||||||||||| |||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  11031425 ttgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 11031505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 194 - 451
Target Start/End: Original strand, 16849879 - 16850136
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16849879 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 16849978  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16849979 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 16850078  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 451  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16850079 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacaccccct 16850136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 172 - 447
Target Start/End: Original strand, 31738741 - 31739026
Alignment:
Q  172 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 262  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||  |||||||    
T  31738741 aatcaacacgttcattgcatggagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaagggaatagtcattc 31738840  T
Q  263 ttaggaataaaac-attccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatattt 361  Q
     |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31738841 ctaggaataaaaatattccaactcctctttcatgggaataaaaatggggagatcatgggttaaaaaatttcctgggtataatttgttcccaggtatattt 31738940  T
Q  362 ttcttttaccttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||| |||||||||||    
T  31738941 ttcttttaccttctaccaaacatgggaaagtgcattcccatcctcatattttaagaaataaattttataacctggaaacaaacacc 31739026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31738562 - 31738669
Alignment:
Q  1 attctcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||    
T  31738562 attctgattataacttgaagcatttcaaaatacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttg 31738661  T
Q  101 aatagaca 108  Q
    ||||||||    
T  31738662 aatagaca 31738669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 16849648 - 16849721
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaata 78  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16849648 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgatagaata 16849721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 16849719 - 16849823
Alignment:
Q  58 atatagttgattgatagaatagaacaatattgttgaaaacttgaatagacacaaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatg 157  Q
    ||||||||||||| || ||||||||||||||||||||||||||   | ||| |||||       |||||||||||||||||||||||||||||| |||||    
T  16849719 atatagttgattgttataatagaacaatattgttgaaaacttg---acacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatg 16849815  T
Q  158 gattacat 165  Q
     |||||||    
T  16849816 aattacat 16849823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 194 - 453
Target Start/End: Complemental strand, 38007255 - 38006996
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38007255 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 38007156  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007155 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 38007056  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 453  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  38007055 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccctta 38006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 172 - 451
Target Start/End: Complemental strand, 51083647 - 51083358
Alignment:
Q  172 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 262  Q
    |||||||| | ||| || || |||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||  |||||||    
T  51083647 aatcaacatggtcattgcatggagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaaggcaatagtcattc 51083548  T
Q  263 ttaggaataaaa-cattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatattt 361  Q
     ||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51083547 ctaggaataaaaacattcaaactcctctttcatgggaataaaaatggagagatcatgggttaaaaattttcctgggtataatttgttcccaagtatattt 51083448  T
Q  362 ttcttttaccttctaccaaacatgggaaagtgcattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  51083447 ttcttttaccttctaccaaacatgggaaagtgcattcccatcctcatattccaaggaataaattttataacttggaaacaaacaccccct 51083358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 51083826 - 51083719
Alignment:
Q  1 attctcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatagaatagaacaatattgttgaaaacttg 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||    
T  51083826 attctgattataacttgaagcatttcaaaatacaccataaaataaaattatgtttacatatagttaattgatagaatagaaaaatattgttgaaaatttg 51083727  T
Q  101 aatagaca 108  Q
    ||||||||    
T  51083726 aatagaca 51083719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 38007491 - 38007311
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgatt------------------gatagaatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||                  |||| ||||||||||||    
T  38007491 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgataaaatatagttgattgatataatagaacaata 38007392  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    ||||||||||||| |||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  38007391 ttgttgaaaactttaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 38007311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 194 - 448
Target Start/End: Complemental strand, 11465838 - 11465584
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11465838 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11465739  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465738 tgggaataaaaatagggagatcatgggttaaaaattttcatgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 11465639  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccc 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465638 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccc 11465584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 194 - 449
Target Start/End: Complemental strand, 3428735 - 3428480
Alignment:
Q  194 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 293  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3428735 agaaattaattggtagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 3428636  T
Q  294 tgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 393  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428635 tgggaataaaaatagggagatcataggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctaccaaacatgggaaagtg 3428536  T
Q  394 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 449  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  3428535 cattcccatcctcatatttccaggaataaattttataacctggaaacaaacacccc 3428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 3428971 - 3428791
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatag------------------aatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||||    
T  3428971 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgatagaatatagttgattgttataatagaacaata 3428872  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||||||||||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  3428871 ttgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 3428791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 11466074 - 11465894
Alignment:
Q  5 tcattataacttgaagcatttcaacatacaccataaaataaaattatgttttcatatagttgattgatag------------------aatagaacaata 86  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||||    
T  11466074 tcattataacttgaagcatttgaaaatacaccatgaaataaaattatgttttcatatagttgattgatagaatatagttgattgatataatagaacaata 11465975  T
Q  87 ttgttgaaaacttgaatagacac--aaatannnnnnngcacaaaccaaaaagaacataaagaaataaaagatggattacat 165  Q
    |||||||||||||||||||||||  |||||       |||||||||||||||||||||||||||||| ||||| |||||||    
T  11465974 ttgttgaaaacttgaatagacacataaatatttttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 11465894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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