View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_1 (Length: 787)
Name: NF14875_low_1
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 307 - 628
Target Start/End: Complemental strand, 35691426 - 35691106
Alignment:
| Q |
307 |
ttgaaagattcttggctcggtcatctatgatggaagcaaaattagaggtatcttctataatgcgaaacatatattgtatattattatttaaacggattac |
406 |
Q |
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| T |
35691426 |
ttgaaagatt-ttggctcggtcatctatgatggaagcaaaattagaggtatcttctataatgcgaaacatatattgtatattattatttaaacggattac |
35691328 |
T |
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| Q |
407 |
tttccatttgtgcatatgaagtatcatttgtcattgcatgcaatcaatttatactgggaacaataaaactacaaaattgaactaaacaaagtgctttatt |
506 |
Q |
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| T |
35691327 |
ttttcatttgtgcatatgaagtatcatttgtcattgcatgcaatcaatttatactgggaacaataaaactacaaaattgaactaaacaaagtgctttatt |
35691228 |
T |
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| Q |
507 |
tcttttttcttcattcaaggaacaaggattcattgtacaatttatgttcttgctatgctaaattggcttaacaaataaacatgatgaagtaaaagggtaa |
606 |
Q |
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| T |
35691227 |
tcttttttcttcattcaaggaacaaggattcattgtacaatttatgttcttgctatgctaaattggcttaacaaataaacatgatgaagtaaaagggtaa |
35691128 |
T |
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| Q |
607 |
caaaaagaattggccagctcct |
628 |
Q |
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| T |
35691127 |
caaaaagaattggccagctcct |
35691106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 35691954 - 35691671
Alignment:
| Q |
16 |
aatatgcaggtgttatagaaaagtactaagtagaccaatttctaggcaagtttcnnnnnnngtttgaacaagttctagacaagtttcttatctacaagtt |
115 |
Q |
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| T |
35691954 |
aataggcaggtgttatagaaaagtactaa----accaatttctaggcaagtttctttttttgtttgaacaagttctagacaagtttcttatctacaagtt |
35691859 |
T |
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| Q |
116 |
ttgggcaaattgcattttaaatttttaaattttgtaattaaacttattcaacagttatcaacagccagtaatattaaccaacaggtactcgccaccctct |
215 |
Q |
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| T |
35691858 |
ttgggcaaattgcattttaaatttttaaattttgtaattaaacttattcaacagttatcaacagccagtaatattaaccaacaggtactcgccaacctct |
35691759 |
T |
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| Q |
216 |
tataatattttgtagcattctctttgtttaatataataatattcagttacattgaatttgatcatatgcaggttctgatttggtctaa |
303 |
Q |
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| T |
35691758 |
tataatattttgtagcattctctttgtttaatataataattttcagttacattgaatttgatcatatgcaggttctgatttggtctaa |
35691671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 685 - 787
Target Start/End: Complemental strand, 35691049 - 35690947
Alignment:
| Q |
685 |
gttgaggtctggaagttaaaacaagggacaaactttcttcttaagtaaaaggagaaataataacaattaagtgaaaaagaaaaggtatcgtgtatgaaga |
784 |
Q |
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| T |
35691049 |
gttgaggtcagaaagttaaaacaagggacaaactttcttcttaagtaaaaggagaaataataacaattaagtgaaaaagaaaaggtatcgtgtatgaaga |
35690950 |
T |
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| Q |
785 |
tat |
787 |
Q |
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| T |
35690949 |
tat |
35690947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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