View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_11 (Length: 474)
Name: NF14875_low_11
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 6 - 463
Target Start/End: Complemental strand, 13080019 - 13079562
Alignment:
| Q |
6 |
aagaatatgtctgaagagttacaacatccggttgagaacatcaatggaaatattggattcgatgatgttgcagaggaggaagaacaaaaggaggttatga |
105 |
Q |
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| T |
13080019 |
aagaatatggctgaagagttacaacatccggttgagaacatcaatggaaatattggattcgatgatgttgcagaggaggaagaacaaaaggaggttatga |
13079920 |
T |
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| Q |
106 |
aagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgaggatgaggaaaataa |
205 |
Q |
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| T |
13079919 |
aagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgaggatgaggaaaataa |
13079820 |
T |
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| Q |
206 |
aattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttgagggagacacaactagagatagaatt |
305 |
Q |
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| T |
13079819 |
aattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttgagggagacactactagagatagaatt |
13079720 |
T |
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| Q |
306 |
gagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatctgatggaagaaaaccaaataagtttcaagagatggaggaaactgaat |
405 |
Q |
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| T |
13079719 |
gagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatttgatggaagaaaaccaaataagtttcaagagatggaggaaactgaat |
13079620 |
T |
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| Q |
406 |
tgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
463 |
Q |
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| T |
13079619 |
tgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
13079562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 179 - 463
Target Start/End: Complemental strand, 13075639 - 13075355
Alignment:
| Q |
179 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
278 |
Q |
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| T |
13075639 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
13075540 |
T |
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| Q |
279 |
gagggagacacaactagagatagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatctgatggaagaaaaccaaata |
378 |
Q |
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| T |
13075539 |
gagggagacacaactagagacagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatttgatggaagaaaaccaaata |
13075440 |
T |
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| Q |
379 |
agtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
463 |
Q |
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| T |
13075439 |
agtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
13075355 |
T |
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