View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_12 (Length: 408)
Name: NF14875_low_12
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_12 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 12011087 - 12011463
Alignment:
| Q |
16 |
atcaacggaagtggaaattgactaaatttcgtaaataattaaaatgcatggaaaaattggacattaacttaagtggttatcaatcataaat-agttaaaa |
114 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
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| T |
12011087 |
atcaacggaagtggacattcactaaatttcgtaaataattaaaatgcatggaaaaattggacattaacttaaatggttatcgatcataaattagttaaaa |
12011186 |
T |
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| Q |
115 |
aataacacttatacatagaacattttgtcattgataaactttaaaatgattattatgcacatgatattttataaaacatgttatgaaattatataaatcg |
214 |
Q |
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| T |
12011187 |
aataacacttatacatagaacattttgtcattgataaactttaaaatgattattatgcacatgatattttataaaacatgttataaaattatataaatcg |
12011286 |
T |
|
| Q |
215 |
ataattattatacactggaaaaattgttgttgttaaaaatctatacaatatatccttcnnnnnnnntgtatacaatataaaatagtctacacaatgtaag |
314 |
Q |
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| T |
12011287 |
ataattattatacactgaaaaaattgttgctgttaaaaatctatacaatatatccttcataaaaaatctatacaatataaaatagtctacacaatgtaag |
12011386 |
T |
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| Q |
315 |
aaagggataaggtggatatatactaaagttttagaaattactaaaatgcatgagagaagttgccatcaattaaatag |
391 |
Q |
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| T |
12011387 |
aaagggataaggtgaatatatactaaagttttagaaattactaaaatgcatgagagaagttgccatcaattaaatag |
12011463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 24 - 391
Target Start/End: Original strand, 49828453 - 49828832
Alignment:
| Q |
24 |
aagtggaaattgactaaatttcgtaaataattaaaatgcatggaaaaattggacattaacttaagtggttatcaatcataaatagttaaaaaataacact |
123 |
Q |
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| T |
49828453 |
aagtggacattgactaaatttcgtaaataattaaaatgcatggaaaaattggacattaacttaaatagttatcaatcataaatagttaaaaac-aacact |
49828551 |
T |
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| Q |
124 |
tatacatagaacattttgtcattgataaactttaaaatgattattatgcacatgatattttataaaacatgttatgaaattatataaatcgataattatt |
223 |
Q |
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| T |
49828552 |
tatacatagaacattttgtcactgataaattttaaaacaattattatgcacatgataagttagcaaacatattataaaattatataagccgataattatt |
49828651 |
T |
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| Q |
224 |
atacactggaaaaattgttgttgttaaaaatctatacaatatatccttc---------nnnnnnnntgtatacaatataaaatagtctacacaatgtaag |
314 |
Q |
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| T |
49828652 |
atacacttgaaaaattgtcgttgctaaaaatttatacaatattttcttcaaaaaaaaagaaagaaatctagacaatataaaaaagtctatacattgtaag |
49828751 |
T |
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| Q |
315 |
a----aagggataaggtggatatatactaaagttttagaaattactaaaatgcatgagagaagttgccatcaattaaatag |
391 |
Q |
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| T |
49828752 |
aaattaagggataaggtgggtatatactaaagtttcagaaattactaaaatgcatgagaggagttggcatcaattaaatag |
49828832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 39 - 266
Target Start/End: Original strand, 30219667 - 30219893
Alignment:
| Q |
39 |
aaatttcgtaaataattaaaatgcatggaaaaattggacattaacttaagtggttatcaatcataaatagttaaaaaataacacttatacatagaacatt |
138 |
Q |
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| T |
30219667 |
aaatttcataaataattaaaatgcatggaaaaattggacattaacttaaatagttatcaatcataaacagttaaaaac-aacacttatatatagaacatt |
30219765 |
T |
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| Q |
139 |
ttgtcattgataaactttaaaatgattattatgcacatgatattttataaaacatgttatgaaattatataaatcgataattattatacactggaaaaat |
238 |
Q |
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| T |
30219766 |
ttgtcactgataaatttgaaaacgattatcatgcacatgataagttagcaaacatattataaaattatataattcgataattattatacacttgaaaaat |
30219865 |
T |
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| Q |
239 |
tgttgttgttaaaaatctatacaatata |
266 |
Q |
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| T |
30219866 |
tgtcgttgctagaaatttatacaatata |
30219893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 283 - 390
Target Start/End: Original strand, 30219883 - 30219990
Alignment:
| Q |
283 |
tatacaatataaaatagtctacacaatgtaagaaagggataaggtggatatatactaaagttttagaaattactaaaatgcatgagagaagttgccatca |
382 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||||||||||||||||| ||||| |
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| T |
30219883 |
tatacaatataaaaaagtctacacaatgtaagaaagggataaggtgggtatatactaaaatttcataaattattaaaatgcatgagagaagttggcatca |
30219982 |
T |
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| Q |
383 |
attaaata |
390 |
Q |
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|||||||| |
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| T |
30219983 |
attaaata |
30219990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 30116 - 30041
Alignment:
| Q |
188 |
aaacatgttatgaaattatataaatcgataattattatacactggaaaaattgttgttgttaaaaatctatacaat |
263 |
Q |
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|||||| |||| ||||| ||||| |||| |||||||||||||| || |||||| |||| ||||| |||||||||| |
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| T |
30116 |
aaacatattataaaattgtataagtcgaaaattattatacacttaaataattgtcgttgctaaaattctatacaat |
30041 |
T |
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