View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14875_low_15 (Length: 311)

Name: NF14875_low_15
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14875_low_15
NF14875_low_15
[»] chr4 (1 HSPs)
chr4 (5-295)||(46280092-46280382)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 46280092 - 46280382
Alignment:
Q  5 gttttgatcttgctgtgtcggtctctcttgctagatctttttctttggatctgctgatccactacagttttgcctttaccagcagctgcaggaagaagat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46280092 gttttgatcttgctgtgtcggtctctcttgctagatctttttctttggatctgctgatccactacagttttgcctttaccagcagctgcaggaagaagat 46280191  T
Q  105 tgttgttagctttgattgttgaattggaaggccgctgatgatgatcagtactgttgttattcatgacaacaggtggatgatgaagttggaaatcaacatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46280192 tgttgttagctttgattgttgaattggaaggccgctgatgatgatcagtactgttgttattcatgacaacaggtggatgatgaagttggaaatcaacatc 46280291  T
Q  205 atgttgttggaggaagatttgatggctgtcttgaaagggatcaatatcatcatcaggataattagggaattgaaagaaagagaaaggactg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46280292 atgttgttggaggaagatttgatggctgtcttgaaagggatcaatatcatcatcaggataattagggaattgaaagaaagagaaaggactg 46280382  T

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