View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_16 (Length: 304)
Name: NF14875_low_16
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 36217098 - 36216815
Alignment:
| Q |
18 |
aagctatgttctatgtcgaattaataatcacacaagattactaaaggcatattataatcagaggtaagaactagtatacgtttaaatcccatttttattg |
117 |
Q |
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| T |
36217098 |
aagctatgttctatgtcgaattaataatcacacaagattactaaaggcatattataatcagaggtaagaactagtatacgtttaaatcccatttttattg |
36216999 |
T |
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| Q |
118 |
ttaaaaaatatttatgagcaataagtaaaaacgaaagtctaactgtgagatttgtttttctttcttacaagccttgattaatatttttgagaatcaaagt |
217 |
Q |
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| T |
36216998 |
ttaaaaaatatttatgagcaataagtaaaaacgaaagtctaactgtgagatttgtttttctttcttacaagccttgattaata-ttttgagaatcaaagt |
36216900 |
T |
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| Q |
218 |
atataaaaccatggaagcgttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtt |
302 |
Q |
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| T |
36216899 |
atataaaaccatggaagcgttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtt |
36216815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 36234833 - 36234751
Alignment:
| Q |
220 |
ataaaaccatggaagcgttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtt |
302 |
Q |
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| T |
36234833 |
ataaaatcatggaagcgttgggagtaatttgggaagttgcgaaaagtttgttcgggtgcgctaatgcacaagctgtctatgtt |
36234751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 36234902 - 36234847
Alignment:
| Q |
77 |
agaggtaagaactagtatacgtttaaatcccatttttattgttaaaaaatatttat |
132 |
Q |
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| T |
36234902 |
agaggtaaaaacttgtatatgtttaaatcctatttttattgttcaaaaatatttat |
36234847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 25466937 - 25467195
Alignment:
| Q |
40 |
aataatcacacaagattactaaaggcatattataatcagaggtaagaactagtatacgtttaaatcccatttttattgttaaaaaatatttatg----ag |
135 |
Q |
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| T |
25466937 |
aataatcacacaacattactaaag-catagtatcatcagaggtaagaactaatatatgtttaaataccattttcattgttcaaaaatatttatgtacgag |
25467035 |
T |
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| Q |
136 |
caataagtaaaaacgaaagtctaactgtgagatttgtttttctttcttacaagccttgattaatatttttgagaatcaaagtatataaaaccatggaagc |
235 |
Q |
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| T |
25467036 |
taaaaaataaatat-aaagtctaactgtaatattttgtttt--ttcatgcaagtcttgattaatatttt-gagaatcaaagtatataaaacaatggaagc |
25467131 |
T |
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| Q |
236 |
gttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctat |
299 |
Q |
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| T |
25467132 |
gttgggagtaatttgggaagttgcaaaatgtttgttcagttgcacaaatgcacaagctgcctat |
25467195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 9770721 - 9770460
Alignment:
| Q |
32 |
gtcgaattaataatcacacaagattactaaaggcatattataatcagaggtaagaactagtatacgtttaaatccca-----tttttattgttaaaaaat |
126 |
Q |
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| T |
9770721 |
gtcgaatcaataatcacagaagattactaaacgcatattatcatcagaggtaaggactagtgtatgtttaaatccctgttttttttttttgttcaaaaat |
9770622 |
T |
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| Q |
127 |
atttat----gagcaataagtaaaaacgaaagtctaactgtgagatttgtttttctttcttacaagccttgattaatatttttgagaatcaaagtatata |
222 |
Q |
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| T |
9770621 |
atttatatatgagcaataaataaaatgtaaagtctaaccgtgagatattatttt--ttcttgcaagccttaattaatatttt-gagaatca--------- |
9770534 |
T |
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| Q |
223 |
aaaccatggaagcgttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtt |
302 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9770533 |
------tggaagcgttgggagtaatttgggaagttgcgaaaagtttgttgagttgcacaaatgcacaagctgcctatgtt |
9770460 |
T |
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