View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_17 (Length: 300)
Name: NF14875_low_17
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 39976166 - 39976435
Alignment:
| Q |
1 |
aaggtaggaaaataccaagaaggattctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaa |
100 |
Q |
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| T |
39976166 |
aaggaaggaaaataccaagaagtattctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaa |
39976265 |
T |
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| Q |
101 |
tgctaatcttccatcatgaaatattaatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976266 |
tgctaatcttccatcatgaaatattaatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataa |
39976365 |
T |
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| Q |
201 |
gcttcctgtcataatcatggagaggtggaattagacataacatatcaacttaattaaaacatgtgtacta |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976366 |
gcttcctgtcataatcatggagaggtggaattagacataacatatcaacttaattaaaacatgtgtacta |
39976435 |
T |
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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28538507 - 28538296
Alignment:
| Q |
1 |
aaggtaggaaaataccaagaaggattctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaa |
100 |
Q |
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| T |
28538507 |
aaggaaggaaattaccaagaagggttctataaatggcaaaagtaattccaattggaatccacacgaacatgcagaaagttgctgagggtgtaggcaagaa |
28538408 |
T |
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| Q |
101 |
tgctaatcttccatcatgaaatattaatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataa |
200 |
Q |
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| T |
28538407 |
tgctagtct--caccatgaaatactaatggctttggatatttct-ccttggcatcactgagttttgacta---ttttttccttcattgttcatcacataa |
28538314 |
T |
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| Q |
201 |
gcttcctgtcataatcat |
218 |
Q |
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|||||||||||||||||| |
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| T |
28538313 |
gcttcctgtcataatcat |
28538296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 16148012 - 16148123
Alignment:
| Q |
57 |
agccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatattaatggctttggatatttgtcccttggcatga |
156 |
Q |
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| T |
16148012 |
agccacatgaacatgtagagagttgatgaaggtgtagggaaaaatgctagtcttccatcatgaaatattaatggctttggatacttttcctttggcatga |
16148111 |
T |
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| Q |
157 |
ttgaatttggac |
168 |
Q |
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| T |
16148112 |
ttgaacttggac |
16148123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 16194942 - 16194826
Alignment:
| Q |
44 |
aattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatattaatggctttggatatttg |
143 |
Q |
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|||||| ||||| |||||||||||||||||||| |||| | | ||||| || |||||||||| || ||||||||||||||||||||||||||||| || |
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| T |
16194942 |
aattcccattggaagccacatgaacatgtagagagttgatgaaggtgtagggaagaatgctagcctgccatcatgaaatattaatggctttggatacttt |
16194843 |
T |
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| Q |
144 |
tcccttggcatgattga |
160 |
Q |
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| T |
16194842 |
tcccttggcataattga |
16194826 |
T |
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