View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_19 (Length: 291)
Name: NF14875_low_19
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 52529156 - 52529427
Alignment:
| Q |
1 |
ctaccaagtcctttatagtactttcagcacatcctaatagaaatccatttccgtaatatccttttggtaggttcattatggtacgaatgttaattgagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52529156 |
ctaccaagtcctttatagtactttcagcacatcctaatagaaatccatttccgtaatatccttttggtaggttcattatggtacgaatgttaatagagaa |
52529255 |
T |
|
| Q |
101 |
aagtagcttaacaattagagtggagggtaatgatagattcattgaacgaatccaagagcgccatgtgtgtgctgccactacttcaaaggtagtacactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52529256 |
aagtagcttaacaattagagtggagggtaatgatagattcattgaacgaatccaagagcgccatgtgtgtgctgccactacttcaaaggtagtacactta |
52529355 |
T |
|
| Q |
201 |
agtgaaggaacacattgtttctttaagtagaggacatgggagggattaaagataaatgatgtgggtactaat |
272 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52529356 |
agtgaagggacacattgtttctttaagtagaggacatgggagggattaaagataaatgatgtgggtactaat |
52529427 |
T |
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