View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_24 (Length: 238)
Name: NF14875_low_24
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42142799 - 42143011
Alignment:
| Q |
1 |
ctgatatatgcttaacatgatattattatctactatattctcaaatgtgtaagtacttaaatgacatgcctgcacttatatttgttttgatttttcaaaa |
100 |
Q |
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| T |
42142799 |
ctgatatatgcttaacatgatattattatctactatattctcaaatgtgtaagtacttaaatgacatgcctgcacttatatttgttttgatttttcaaaa |
42142898 |
T |
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| Q |
101 |
ctccttttggcattcaaaatgatttgatgcctggaccggagtatcttgcggattcaccccttgatattggaatctgaattcaagattccatgagaatatt |
200 |
Q |
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| T |
42142899 |
ctccttttggcattcaaaatgatttgatgcctggaccggagtatcttgcggattcaccccttgatattggaatctgaattcaagattccatgataatatt |
42142998 |
T |
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| Q |
201 |
atcaccaacattg |
213 |
Q |
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||||||||||||| |
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| T |
42142999 |
atcaccaacattg |
42143011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 29051568 - 29051511
Alignment:
| Q |
70 |
ctgcacttatatttgttttgatttttcaaaactccttttggcattcaaaatgatttga |
127 |
Q |
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| T |
29051568 |
ctgcacctatatttgttttgatttttcaaaactcattttggaattcaaaatgatttga |
29051511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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