View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14875_low_26 (Length: 235)

Name: NF14875_low_26
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14875_low_26
NF14875_low_26
[»] chr3 (21 HSPs)
chr3 (15-235)||(55452637-55452857)
chr3 (71-202)||(25253710-25253842)
chr3 (72-202)||(33438731-33438862)
chr3 (72-153)||(9505170-9505252)
chr3 (73-139)||(5418688-5418755)
chr3 (73-203)||(12710712-12710843)
chr3 (71-203)||(54393442-54393575)
chr3 (72-199)||(41609897-41610024)
chr3 (72-139)||(52199438-52199506)
chr3 (111-201)||(26049541-26049631)
chr3 (72-208)||(32689178-32689315)
chr3 (71-202)||(19560774-19560906)
chr3 (73-168)||(30662165-30662261)
chr3 (71-138)||(52934820-52934888)
chr3 (72-138)||(39135363-39135430)
chr3 (72-202)||(39942800-39942931)
chr3 (72-193)||(18074585-18074707)
chr3 (74-155)||(36917870-36917952)
chr3 (111-196)||(45714745-45714830)
chr3 (107-139)||(1674674-1674706)
chr3 (74-153)||(28242594-28242674)
[»] chr6 (6 HSPs)
chr6 (72-202)||(10961796-10961927)
chr6 (73-139)||(33110468-33110535)
chr6 (72-139)||(10346730-10346798)
chr6 (73-181)||(18095529-18095638)
chr6 (75-135)||(22295928-22295989)
chr6 (68-139)||(1501853-1501925)
[»] chr4 (27 HSPs)
chr4 (72-202)||(15697083-15697214)
chr4 (72-202)||(22184512-22184643)
chr4 (72-202)||(52813610-52813741)
chr4 (72-202)||(53369881-53370012)
chr4 (72-204)||(12789550-12789683)
chr4 (72-203)||(19852987-19853119)
chr4 (72-203)||(36156293-36156425)
chr4 (72-139)||(49820991-49821059)
chr4 (111-198)||(12673032-12673119)
chr4 (72-202)||(21441590-21441721)
chr4 (73-135)||(52706227-52706290)
chr4 (73-138)||(22721338-22721403)
chr4 (71-138)||(11055290-11055358)
chr4 (72-139)||(50606017-50606085)
chr4 (76-128)||(52733775-52733827)
chr4 (73-139)||(7505539-7505606)
chr4 (73-139)||(24007966-24008033)
chr4 (71-153)||(26632944-26633027)
chr4 (107-202)||(38791737-38791831)
chr4 (111-202)||(46944544-46944635)
chr4 (72-202)||(48339099-48339230)
chr4 (72-202)||(48731173-48731304)
chr4 (116-203)||(50146917-50147004)
chr4 (105-139)||(44378293-44378327)
chr4 (107-139)||(16742399-16742431)
chr4 (72-139)||(44791306-44791374)
chr4 (111-139)||(55892048-55892076)
[»] chr7 (27 HSPs)
chr7 (73-193)||(45176260-45176381)
chr7 (72-202)||(5776130-5776261)
chr7 (73-139)||(48634462-48634529)
chr7 (73-202)||(46573612-46573742)
chr7 (73-201)||(36927014-36927143)
chr7 (72-139)||(28949821-28949889)
chr7 (72-211)||(33124709-33124849)
chr7 (73-139)||(11595859-11595926)
chr7 (73-139)||(45055743-45055810)
chr7 (72-204)||(44421899-44422033)
chr7 (73-139)||(33935523-33935590)
chr7 (72-202)||(37334292-37334423)
chr7 (72-153)||(10618935-10619017)
chr7 (107-199)||(388996-389088)
chr7 (72-139)||(5794999-5795067)
chr7 (73-139)||(40480113-40480181)
chr7 (119-203)||(43052934-43053018)
chr7 (72-202)||(665847-665978)
chr7 (72-202)||(22075077-22075208)
chr7 (73-138)||(7447891-7447957)
chr7 (72-136)||(10096485-10096550)
chr7 (71-139)||(23227062-23227131)
chr7 (71-139)||(23236215-23236284)
chr7 (107-203)||(222225-222321)
chr7 (72-139)||(3930779-3930847)
chr7 (72-139)||(42072097-42072165)
chr7 (72-139)||(48505851-48505919)
[»] chr2 (14 HSPs)
chr2 (72-196)||(44740489-44740614)
chr2 (76-139)||(2647037-2647101)
chr2 (72-203)||(11027917-11028049)
chr2 (72-204)||(27634680-27634813)
chr2 (72-203)||(3409187-3409319)
chr2 (72-139)||(36538665-36538733)
chr2 (72-153)||(9963768-9963850)
chr2 (72-139)||(26436363-26436431)
chr2 (73-139)||(33164043-33164110)
chr2 (72-202)||(33831504-33831635)
chr2 (75-205)||(41332243-41332374)
chr2 (72-139)||(24844729-24844797)
chr2 (72-139)||(34064714-34064782)
chr2 (72-139)||(41959152-41959220)
[»] chr1 (23 HSPs)
chr1 (71-202)||(35810726-35810858)
chr1 (73-139)||(19508538-19508605)
chr1 (72-202)||(24469817-24469948)
chr1 (71-139)||(31869602-31869671)
chr1 (73-168)||(5204503-5204599)
chr1 (72-202)||(7702844-7702975)
chr1 (73-195)||(28006360-28006483)
chr1 (73-139)||(45581071-45581138)
chr1 (72-202)||(47602862-47602993)
chr1 (74-139)||(45653494-45653560)
chr1 (72-139)||(37441249-37441317)
chr1 (73-139)||(23915660-23915727)
chr1 (72-202)||(25124885-25125016)
chr1 (72-202)||(32179867-32179998)
chr1 (72-202)||(42937083-42937214)
chr1 (73-139)||(43087529-43087596)
chr1 (73-202)||(44596527-44596657)
chr1 (76-132)||(30251437-30251494)
chr1 (71-139)||(39802830-39802899)
chr1 (71-138)||(15306501-15306569)
chr1 (78-193)||(15662964-15663080)
chr1 (107-139)||(31816613-31816645)
chr1 (76-139)||(51432266-51432330)
[»] chr5 (12 HSPs)
chr5 (73-139)||(26218057-26218124)
chr5 (72-203)||(1840686-1840818)
chr5 (72-139)||(18880201-18880269)
chr5 (73-139)||(14500769-14500836)
chr5 (72-202)||(27906107-27906238)
chr5 (73-139)||(41783335-41783402)
chr5 (73-202)||(3801364-3801494)
chr5 (71-202)||(15933168-15933303)
chr5 (72-153)||(39414190-39414273)
chr5 (73-139)||(11136070-11136136)
chr5 (72-153)||(19282163-19282245)
chr5 (78-205)||(2676031-2676159)
[»] chr8 (7 HSPs)
chr8 (73-139)||(34655045-34655112)
chr8 (73-139)||(43967520-43967587)
chr8 (71-171)||(24854607-24854708)
chr8 (72-139)||(11161581-11161649)
chr8 (107-202)||(9412524-9412619)
chr8 (116-194)||(34516192-34516270)
chr8 (73-136)||(27189148-27189212)
[»] scaffold0025 (1 HSPs)
scaffold0025 (71-136)||(11398-11464)
[»] scaffold0316 (1 HSPs)
scaffold0316 (72-138)||(19305-19372)
[»] scaffold0204 (1 HSPs)
scaffold0204 (72-202)||(26621-26752)
[»] scaffold0444 (1 HSPs)
scaffold0444 (105-139)||(830-864)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 55452857 - 55452637
Alignment:
Q  15 tatgaaaagttcatccgaatcaaataaactaagattcagatttttattacaaatttggctcatttagttaacgaacttaagttttagcttaattcaactc 114  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  55452857 tatgaaaagttcatccgaatcaaataaactaaaattcaaatttttattacaaattcgactcatttagttaacgaacttaagttttagcttaattcaactc 55452758  T
Q  115 gtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccctagataagatagca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55452757 gtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccctagataagatagca 55452658  T
Q  215 tataacgttggaggaaatttc 235  Q
    |||||||||||||||||||||    
T  55452657 tataacgttggaggaaatttc 55452637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 25253710 - 25253842
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    |||||||||| ||||||||||||| |||||||| || |||| ||| ||||||||||||||||||||||||  ||  |||||||||| || |  ||||||     
T  25253710 ggctcatttatttaacgaacttaatttttagctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaacta 25253809  T
Q  170 taattgagttggctcagttcattgccaacccta 202  Q
    || | ||||||| || ||||||||||| |||||    
T  25253810 tattcgagttggttcggttcattgccagcccta 25253842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 33438862 - 33438731
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || ||| |||| ||||||||||||||||||||||||   ||||||||||| | ||||  ||||||||    
T  33438862 gctcaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaacttt 33438763  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || |||||||| || |||||    
T  33438762 aatcgagttggttcggttcattgtcagcccta 33438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 9505252 - 9505170
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    ||||||||| ||||||||||||| ||| |||| || |||||||| ||||||||||||||||||||||||  || |||||||||    
T  9505252 gctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcga 9505170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 5418688 - 5418755
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || ||| ||||||||||||||||||| |||||||||    
T  5418688 ctcatttagttaacgaacttaatctttagctcaagttcgactcgtttggttcatgaactaagttcaac 5418755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 12710712 - 12710843
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||| ||||| ||| | || || ||| |||| ||||||||||||||||||||||||  ||||||| |||| | ||||||| |||| |     
T  12710712 ctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactatt 12710811  T
Q  172 attgagttggctcagttcattgccaaccctag 203  Q
     | ||||||| || ||||||||||| ||||||    
T  12710812 ttcgagttggttcggttcattgccagccctag 12710843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 54393575 - 54393442
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    |||||| ||| || |||||||||| ||| |||| || |||  ||| ||||||| ||||||||||||||||   ||||||||||| | ||||  | |||||    
T  54393575 ggctcaattatttgacgaacttaattttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactt 54393476  T
Q  170 taattgagttggctcagttcattgccaaccctag 203  Q
    |||| ||||||| || ||||||||||| ||||||    
T  54393475 taatcgagttggttcggttcattgccagccctag 54393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 41609897 - 41610024
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||||| |||| || |||| |    
T  41609897 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 41609996  T
Q  171 aattgagttggctcagttcattgccaacc 199  Q
    ||| ||||||| || ||||||||||||||    
T  41609997 aatcgagttgg-tcggttcattgccaacc 41610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 52199438 - 52199506
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||  ||||||||||||| ||| |||| || |||| ||||||||||||||||||||||||||||    
T  52199438 gctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaac 52199506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 26049631 - 26049541
Alignment:
Q  111 actcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccct 201  Q
    |||| |||| |||||||||||||||||||  ||||||| |||| | |||||||||||| |  | ||||||| || ||||||||||| ||||    
T  26049631 actcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggttcggttcattgccagccct 26049541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 32689178 - 32689315
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | |  | |||||| |||| || |||| |    
T  32689178 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactat 32689277  T
Q  171 aattgagttggctcagttcattgccaaccctagataag 208  Q
    ||| ||||||| || |||||||| || |||||| ||||    
T  32689278 aatcgagttggttcggttcattgtcagccctagttaag 32689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 19560906 - 19560774
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    |||||||||| |||||| |||||| | ||| || || |||| || |||| ||||||||||||||||||||   | ||||||||||| ||||  | ||||     
T  19560906 ggctcatttatttaacggacttaactcttaactcaagttcagcttgtttcgttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaacta 19560807  T
Q  170 taattgagttggctcagttcattgccaacccta 202  Q
    || | ||||||| || ||||||||||| |||||    
T  19560806 tattcgagttggttcggttcattgccagcccta 19560774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 30662261 - 30662165
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaact 168  Q
    |||||||| ||||||| ||||| ||| | || || ||| |||| |||| |||||||||||||||||||  ||||||| |||| | ||||||||||||    
T  30662261 ctcatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatctcaaact 30662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 52934820 - 52934888
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    |||||||||| ||||||||||||| |||  ||| || |||| ||| |||||||||||||||||||||||    
T  52934820 ggctcatttatttaacgaacttaattttctgctcaagttcagctcatttggttcatgaaccaagttcaa 52934888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 39135363 - 39135430
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    ||||||||| ||||||||||||| ||| |||| || |||  ||| |||||||||||||||||||||||    
T  39135363 gctcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaa 39135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 39942931 - 39942800
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    |||||| || ||||||||||||| ||| |||| || |||| ||| ||  ||||||||||||||||||||   | ||||| ||| | |||| || |||| |    
T  39942931 gctcatctatttaacgaacttaattttcagctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcgaatttcgaactat 39942832  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    | | ||||||| ||||||||||||||| ||||    
T  39942831 actcgagttggttcagttcattgccaatccta 39942800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 18074585 - 18074707
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagct-taattcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||||||||||||||||| ||| || |  |||||||||| ||| ||||||||| ||| ||||||   | |||| || | | || |||| |||| |    
T  18074585 gctcatttagttaacgaacttaattttcagttcaaattcaactcatttagttcatgaaacaaattcaacgaattaattatcaaatcgagtctcgaactct 18074684  T
Q  171 aattgagttggctcagttcattg 193  Q
    | | |||||||||||||||||||    
T  18074685 attcgagttggctcagttcattg 18074707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 36917952 - 36917870
Alignment:
Q  74 tcatttagttaacgaacttaagttttagcttaatt-caactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagt 155  Q
    ||||||| || |||||||||| ||||| ||||||| ||||||||| |||| |||||||| |||||||   | |||||||||||    
T  36917952 tcatttaattcacgaacttaatttttaacttaattacaactcgttgggtttatgaaccacgttcaacgacttaattgtcgagt 36917870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 45714745 - 45714830
Alignment:
Q  111 actcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgcca 196  Q
    |||| |||| || ||||| ||||||||||   ||||||||||| | ||||  | ||||||||| ||||||| ||||||||||||||    
T  45714745 actcatttgatttatgaatcaagttcaacgaatcaattgtcgaatcgaataacgaactttaatcgagttggttcagttcattgcca 45714830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 1674674 - 1674706
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||||||||||||||    
T  1674674 ttcaactcatttggttcatgaaccaagttcaac 1674706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 28242594 - 28242674
Alignment:
Q  74 tcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    ||||||| |||||||| |||| ||| |||| || |||| ||| ||||||||||||||||| ||||||  || |||||||||    
T  28242594 tcatttatttaacgaatttaattttcagctcaaattcagctcatttggttcatgaaccaaattcaacgagttaattgtcga 28242674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 10961927 - 10961796
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || ||| |||| ||||||||||||||||||||||||   ||||||||||| |  |||  ||||||||    
T  10961927 gctcaattagttgacgaacttaattttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaacttt 10961828  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  10961827 aatcgagttggttcggttcattgccagcccta 10961796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 33110468 - 33110535
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  |||||||||| |||  ||||||||||||||||||||||||||||    
T  33110468 ctcatttagttaacgaacttaatctttagcttaagttcggctcgtttggttcatgaaccaagttcaac 33110535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 10346730 - 10346798
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  10346730 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 10346798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 18095529 - 18095638
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||||||||| ||||| || || ||| |||  |||||||| |||||||||||||||   || ||| |||| | || |||||||||||     
T  18095529 ctcatttatttaacgaacttaatttttaactcaagttcgacttatttggttcgtgaaccaagttcaacgaatccattatcgaatcgagtctcaaactttt 18095628  T
Q  172 attgagttgg 181  Q
     |||||||||    
T  18095629 tttgagttgg 18095638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 22295928 - 22295989
Alignment:
Q  75 catttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagtt 135  Q
    |||||| |||||||||||||  ||||||| || |||  ||||||||||||||||||||||||    
T  22295928 catttacttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagtt 22295989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 1501853 - 1501925
Alignment:
Q  68 tttggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||| ||||||||||||| ||| |||| || |||   || |||||||||||||| |||||||||    
T  1501853 tttggctcatttatttaacgaacttaattttcagctcaagttcggttcatttggttcatgaacgaagttcaac 1501925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 15697214 - 15697083
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||| ||||||||||||||| |||||||| || |||| ||  ||||||||||||| ||||||||||   ||||||||||||| || |||| ||||||    
T  15697214 gctcattaagttaacgaacttaatttttagctcaagttcagcttatttggttcatgaatcaagttcaacgaatcaattgtcgagtcgagtctcgaacttt 15697115  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    | | |||||| ||| |||||||| || |||||    
T  15697114 attcgagttgtctcggttcattgtcagcccta 15697083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 22184512 - 22184643
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||  ||||||||||||| ||| |||| || |||| ||||||||||||||||||||||||||||  || ||||||||| | || || |||||| |    
T  22184512 gctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactat 22184611  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
      | ||||||| || ||||||||||| |||||    
T  22184612 tgtcgagttggttcggttcattgccagcccta 22184643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 52813610 - 52813741
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||  ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||  || ||||||| | | || || |||||| |    
T  52813610 gctcatttgtttaacgaacttaattttcagcttaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcaaatagagtcccaaactat 52813709  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
      | ||||||| || |||||||| ||||||||    
T  52813710 tgtcgagttggttcggttcattgtcaacccta 52813741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 53369881 - 53370012
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | ||||||||||| || |||| |    
T  53369881 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactat 53369980  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  53369981 aatcgagttggttcggttcattgccagcccta 53370012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 12789683 - 12789550
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || |||| |||||| ||||||| |||||||||||||   | |  | |||||| |||| || |||| |    
T  12789683 gctcatttaattaacgaacttaattttcagctcaagttcagctcgttaggttcataaaccaagttcaacggattagatatcgagtcgaatgtcgaactat 12789584  T
Q  171 aattgagttggctcagttcattgccaaccctaga 204  Q
    ||| ||||||| || ||||||||||| |||||||    
T  12789583 aatcgagttggttcggttcattgccagccctaga 12789550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 19852987 - 19853119
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||||| |||| ||||||| |    
T  19852987 gctcatttaattaacgaacttaattttcagctcaagtccatctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcaaactat 19853086  T
Q  171 aattgagttggctcagttcattgccaaccctag 203  Q
    ||| ||||||| ||  ||||||| || ||||||    
T  19853087 aatcgagttggttcgattcattgacagccctag 19853119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 36156425 - 36156293
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || |||  ||| ||||||||| ||||||||||||||   ||||||||||| | ||||  | ||||||    
T  36156425 gctcaattagttgacgaacttaattttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaacttt 36156326  T
Q  171 aattgagttggctcagttcattgccaaccctag 203  Q
    ||| ||||||| || |||||||| |||| ||||    
T  36156325 aatcgagttggttcggttcattgtcaacgctag 36156293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 49820991 - 49821059
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| ||||||| || | |||||| |||||||||||||||||||||    
T  49820991 gctcatttaattaacgaacttaattttcagcttaagtccagctcgttaggttcatgaaccaagttcaac 49821059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 12673119 - 12673032
Alignment:
Q  111 actcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaac 198  Q
    |||| ||||||||||||||||||||||||  ||||||| |||| | ||||||| |||| |  | ||||||| || |||||||||||||    
T  12673119 actcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgccaac 12673032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 21441590 - 21441721
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | |  | |||||| |||| || |||| |    
T  21441590 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactat 21441689  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || |||||||| ||||||||    
T  21441690 aatcgagttggttcggttcattgtcaacccta 21441721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 52706227 - 52706290
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagtt 135  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||    
T  52706227 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagtt 52706290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 22721338 - 22721403
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    |||||||| ||||||||||||| ||||||||||| ||   |||||||||||||||||||||||||||    
T  22721338 ctcatttatttaacgaacttaa-ttttagcttaagtttgcctcgtttggttcatgaaccaagttcaa 22721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 11055358 - 11055290
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    |||||||||| ||||||||||||| |||  ||| || |||| ||| |||||||||||||||||||||||    
T  11055358 ggctcatttatttaacgaacttaattttccgctcaagttcagctcatttggttcatgaaccaagttcaa 11055290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 50606017 - 50606085
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  50606017 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 50606085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 52733827 - 52733775
Alignment:
Q  76 atttagttaacgaacttaagttttagcttaattcaactcgtttggttcatgaa 128  Q
    ||||| ||||||||||||| ||| |||| |||||||||| |||||||||||||    
T  52733827 atttatttaacgaacttaattttcagctcaattcaactcatttggttcatgaa 52733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 7505539 - 7505606
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||| |||| |||||||| || |||  ||| ||||||||||||| ||||||||||    
T  7505539 ctcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaac 7505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 24008033 - 24007966
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||| ||| | || || || |||||||| |||||||||||||||||||||    
T  24008033 ctcatttatttaacgaacttaattttaaactcaagtttaactcgttaggttcatgaaccaagttcaac 24007966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 26632944 - 26633027
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    |||||||||| ||||||||||||| ||| |||| || |||| ||| ||||||| |||| |||||||||||  || |||||||||    
T  26632944 ggctcatttatttaacgaacttaattttcagctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcga 26633027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 38791737 - 38791831
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaacccta 202  Q
    |||| ||| ||||||||||||||||||||||||  || ||||||||| |||| || |||||| |  | ||||||| || ||||||||||| |||||    
T  38791737 ttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgattc-caaactattgtcgagttggttcggttcattgccagcccta 38791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 46944635 - 46944544
Alignment:
Q  111 actcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaacccta 202  Q
    |||| ||||||||||||||||||||||||  | ||||| |||| | ||||||| |||| |  ||||||||| || |||||||| || |||||    
T  46944635 actcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggttcggttcattgtcagcccta 46944544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 48339230 - 48339099
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || ||| |||| |||| |||||||||||||||||||   ||| ||||||| | ||||  | |||| |    
T  48339230 gctcaattagttgacgaacttaattttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactct 48339131  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||||||||||| ||  ||||||| || |||||    
T  48339130 aattgagttggttcgattcattgtcagcccta 48339099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 48731304 - 48731173
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| |||||||| || ||||  |  ||||||||||||||||| |||||     |||||||||||| |||| || |||| |    
T  48731304 gctcatttaattaacgaacttaatttttagctcaagttcagtttatttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactat 48731205  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    | | ||||||| || |||||||| || |||||    
T  48731204 attcgagttggttcggttcattggcagcccta 48731173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 50147004 - 50146917
Alignment:
Q  116 tttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccctag 203  Q
    ||||||||||||||||||||||||   ||||||||||| | ||||  | ||||||||| || |||| || ||||||||| | ||||||    
T  50147004 tttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttcattgctagccctag 50146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 44378293 - 44378327
Alignment:
Q  105 aattcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||||||||||||||    
T  44378293 aattcaactcatttggttcatgaaccaagttcaac 44378327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 16742431 - 16742399
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||||||||||||||    
T  16742431 ttcaactcatttggttcatgaaccaagttcaac 16742399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 44791374 - 44791306
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaatt-caactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| || | || | || |||||| |||||||||||||||||||||    
T  44791374 gctcatttaattaacgaacttaattttcagttcaagtgcagctcgttaggttcatgaaccaagttcaac 44791306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 55892076 - 55892048
Alignment:
Q  111 actcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||||||||||||||||||||||    
T  55892076 actcgtttggttcatgaaccaagttcaac 55892048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 45176260 - 45176381
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||||||||| ||| |||| || |||| ||||||||||||||||||||||||||||   | |||| |||||| |||| ||||||| ||    
T  45176260 ctcatttaattaacgaacttaattttcagctaaagttcagctcgtttggttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactata 45176359  T
Q  172 attgagttggctcagttcattg 193  Q
    || ||||| | || ||||||||    
T  45176360 atcgagtttgttcggttcattg 45176381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 5776261 - 5776130
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||||| |||| || |||| |    
T  5776261 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 5776162  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || |||||||||||||||||    
T  5776161 aatcgagttggttcggttcattgccaacccta 5776130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 48634462 - 48634529
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||    
T  48634462 ctcatttatttaacgaacttaatttttagctcaagttcaactcatttggttcatgaaccaagttcaac 48634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 46573742 - 46573612
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||| ||||| ||| | ||||| ||| |||| ||||||||||||||||||||||||  ||||||| |||| | ||||||| || | |     
T  46573742 ctcatttatttaacgagcttaattttcaacttaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattatt 46573643  T
Q  172 attgagttggctcagttcattgccaacccta 202  Q
     ||||||||| || ||||||||||| |||||    
T  46573642 tttgagttggttcggttcattgccagcccta 46573612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 36927014 - 36927143
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaattc-aactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||   | |  | |||||| |||| || |||| ||    
T  36927014 ctcatttaattaacgaacttaatttttagctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactata 36927113  T
Q  172 attgagttggctcagttcattgccaaccct 201  Q
    || ||||||| || ||||||||||| ||||    
T  36927114 atcgagttggttcggttcattgccagccct 36927143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 28949889 - 28949821
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaatt-caactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||    
T  28949889 gctcatttaattaacgaacttaatttttagctcaattccagctcgttaggttcatgaaccaagttcaac 28949821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 33124709 - 33124849
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || ||||| || |||||||||| |||||||||||||  || ||||||||| | || | ||||||| |    
T  33124709 gctcatttatttaacgaacttaattttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactat 33124808  T
Q  171 aattgagttggctcagttcattgccaaccctagataagata 211  Q
      | ||||||| || ||||||||||| ||||| || |||||    
T  33124809 tgtcgagttggttcggttcattgccagccctacatcagata 33124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 11595926 - 11595859
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||||||    
T  11595926 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaac 11595859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 45055743 - 45055810
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||||||    
T  45055743 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaac 45055810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 44422033 - 44421899
Alignment:
Q  72 gctcatttagttaacgaacttaagtttt-agcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    ||||||||  ||||||||||||| |||| |||| || |||| ||||||||||||||||||||||||||||  || ||||||||| | || || ||||||     
T  44422033 gctcatttgtttaacgaacttaaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaacta 44421934  T
Q  170 taattgagttggctcagttcattgccaaccctaga 204  Q
    |  | ||||||| || |||||||| || |||||||    
T  44421933 ttgtcgagttggttcggttcattgacagccctaga 44421899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 33935523 - 33935590
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||  ||||||||||||| ||| |||| || |||| ||||||||||||||||||||||||||||    
T  33935523 ctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaac 33935590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 37334292 - 37334423
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||| | |||| || |||| |    
T  37334292 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgaatcgaatgtcgaactat 37334391  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || |||||||| ||||||||    
T  37334392 aatcgagttggttcggttcattgtcaacccta 37334423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 10618935 - 10619017
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    ||||||||| ||||||||||||| ||| |||| || |||| ||| ||| ||||||||||||||||||||  || |||||||||    
T  10618935 gctcatttatttaacgaacttaattttcagctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattgtcga 10619017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 388996 - 389088
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaacc 199  Q
    |||| |||||| |||||||||||||||||||||   | || | ||||||||||| || |||| |||| ||||||  || ||||||||||||||    
T  388996 ttcagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttgattcggttcattgccaacc 389088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 5795067 - 5794999
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  5795067 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 5794999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 40480181 - 40480113
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgttt-ggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||| |||||||||||||||||||||    
T  40480181 ctcatttagttaacgaacttaatctttagctcaagttcggctcgttttggttcatgaaccaagttcaac 40480113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 43052934 - 43053018
Alignment:
Q  119 ggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccctag 203  Q
    |||||||||||||||||||||   | || | |||||| |||| || |||| |||| ||||||| || ||||||||||||||||||    
T  43052934 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccaaccctag 43053018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 665978 - 665847
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||| || |||   | || | |||||| |||| || |||| |    
T  665978 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaaatttaacggattaaatatcgagtcgaatgtcgaactat 665879  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  665878 aatcgagttggttcggttcattgccagcccta 665847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 22075077 - 22075208
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || |||| ||| |||||||| ||||||| |||||||  || ||||||||| | || |   ||||| |    
T  22075077 gctcatttatttaacgaacttaattttcagctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattgtcgaatcgagttctaaactat 22075176  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
     || ||||||| || ||||||||||| |||||    
T  22075177 tatcgagttggttcggttcattgccagcccta 22075208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 7447891 - 7447957
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    |||||||| ||||||||||||| ||| |||| || |||  ||| |||||||||||||||||||||||    
T  7447891 ctcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaa 7447957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 10096485 - 10096550
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttc 136  Q
    ||||||||||||| ||||||||| || | | | || |||||||| |||||||||||||||||||||    
T  10096485 gctcatttagttagcgaacttaatttctcgttcaagttcaactcatttggttcatgaaccaagttc 10096550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23227131 - 23227062
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||| ||| |||| || |||| ||| |||| |||||| ||||||||||||    
T  23227131 ggctcatttatttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaac 23227062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23236284 - 23236215
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||| ||| |||| || |||| ||| |||| |||||| ||||||||||||    
T  23236284 ggctcatttatttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaac 23236215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 222321 - 222225
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaaccctag 203  Q
    |||| ||||||||||||||||||||| ||||||  || ||||||||| |  | || |||||| |  | ||||||| || ||||||||||| ||||||    
T  222321 ttcagctcgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcccaaactattgtcgagttggttcggttcattgccagccctag 222225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 3930847 - 3930779
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||| ||||||||||||    
T  3930847 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatggaccaagttcaac 3930779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 42072097 - 42072165
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || | || |||||| |||||||||| ||||||||||    
T  42072097 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaatcaagttcaac 42072165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 48505919 - 48505851
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | ||| || |||||||||||||||||||||    
T  48505919 gctcatttaattaacgaacttaattttcagctcaagtccagctcattaggttcatgaaccaagttcaac 48505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 44740614 - 44740489
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||  ||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||  || ||||||||| | || || |||||| |    
T  44740614 gctcatttgtttaacgaacttaatttttagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactat 44740515  T
Q  171 aattgagttggctcagttcattgcca 196  Q
      | ||||||| || |||||||||||    
T  44740514 tgtcgagttggttcggttcattgcca 44740489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 2647101 - 2647037
Alignment:
Q  76 atttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||| |||||||| || |||  ||||||||||||||||||||||||||||    
T  2647101 atttagttaacgaacttaatttttagctcaagttcggctcgtttggttcatgaaccaagttcaac 2647037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 11027917 - 11028049
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| |||||| | || |||  ||| ||||||||||||||||||||| ||   |||||| |||| ||||||  | |||| |    
T  11027917 gctcaattagttgacgaacttaatttttagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaattgaattacgaactct 11028016  T
Q  171 aattgagttggctcagttcattgccaaccctag 203  Q
    ||||||||||| || ||||||||||| ||||||    
T  11028017 aattgagttggttcggttcattgccagccctag 11028049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 27634680 - 27634813
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| ||||||||||| |||||||||   | || | |||||| |||| || |||| |    
T  27634680 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaactaagttcaacggattaaatatcgagtcgaatgtcgaactat 27634779  T
Q  171 aattgagttggctcagttcattgccaaccctaga 204  Q
    ||| ||||||| || ||||||||||| |||||||    
T  27634780 aatcgagttggttcggttcattgccagccctaga 27634813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 3409319 - 3409187
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || ||||  || ||||||||||||||||||||||||  || ||||||||| | || | || |||| |    
T  3409319 gctcatttatttaacgaacttaattttcagctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactat 3409220  T
Q  171 aattgagttggctcagttcattgccaaccctag 203  Q
      | ||||||| || ||||||||||| ||||||    
T  3409219 tgtcgagttggttcggttcattgccagccctag 3409187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 36538665 - 36538733
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattc-aactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || |||||||| |||||||||||||||||||||    
T  36538665 gctcatttaattaacgaacttaattttcagctcaagtccaactcgttaggttcatgaaccaagttcaac 36538733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 9963768 - 9963850
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    |||||||||  |||||||||||| ||||| ||||| |||| ||| ||||||||||||||| ||||||||  || |||||||||    
T  9963768 gctcatttatctaacgaacttaatttttaacttaagttcagctcatttggttcatgaacccagttcaacgagttaattgtcga 9963850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 26436363 - 26436431
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| |  |||| |||||| |||||||||||||||||||||    
T  26436363 gctcatttaattaacgaacttaattttcagctcacgttcagctcgttaggttcatgaaccaagttcaac 26436431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 33164110 - 33164043
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  33164110 ctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 33164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 33831504 - 33831635
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || | || |||||| |||||||||||||| ||||||   | |  | |||||| |||| || |||| |    
T  33831504 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaaattcaacggattagatatcgagtcgaatgtcgaactat 33831603  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  33831604 aatcgagttggttcggttcattgccagcccta 33831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 41332243 - 41332374
Alignment:
Q  75 catttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaat 173  Q
    |||||| ||||| ||||||| ||| |||| || ||||||||  |||||| ||||||||||||||||  || ||||||||| | || | || |||| || |    
T  41332243 catttatttaacaaacttaattttcagctcaaattcaactcaattggtttatgaaccaagttcaacaagttaattgtcgaatcgagtttcgaactatatt 41332342  T
Q  174 tgagttggctcagttcattgccaaccctagat 205  Q
     ||||||| |  |||||||||||||| |||||    
T  41332343 cgagttggtttggttcattgccaaccttagat 41332374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 24844797 - 24844729
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||| |||| |||| ||| |||| || |||| ||| ||||||||||||||||||||||||    
T  24844797 gctcatttatttatcgaatttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaac 24844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 34064714 - 34064782
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || | || |||||| ||||||||||| |||||||||    
T  34064714 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaactaagttcaac 34064782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 41959152 - 41959220
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || | || |||||| |||||||||| ||||||||||    
T  41959152 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaatcaagttcaac 41959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 35810726 - 35810858
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    |||||| ||| || |||||||||| ||| |||| || |||  ||| ||||||||||||||||||||||||   ||||||||||| | ||||  | |||||    
T  35810726 ggctcaattatttgacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactt 35810825  T
Q  170 taattgagttggctcagttcattgccaacccta 202  Q
    |||| ||||||| || ||||||||||| |||||    
T  35810826 taatcgagttggttcggttcattgccagcccta 35810858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 19508538 - 19508605
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||||||    
T  19508538 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaac 19508605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 24469948 - 24469817
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||||| |||| || |||| |    
T  24469948 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 24469849  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  24469848 aatcgagttggttcggttcattgccagcccta 24469817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 31869602 - 31869671
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||| ||| ||||||| |||  ||| ||||||||||||||||||||||||    
T  31869602 ggctcatttatttaacgaacttaattttcagcttaagttcggctcatttggttcatgaaccaagttcaac 31869671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 5204599 - 5204503
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaact 168  Q
    |||||||| ||||||||||||| ||| | || || ||| |||| ||||||||| ||||||||||||||  ||||||| |||| | ||||||||||||    
T  5204599 ctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaact 5204503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 7702844 - 7702975
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| | |||||||||||||||||||   | || | |||||| |||| || |||| |    
T  7702844 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 7702943  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  7702944 aatcgagttggttcggttcattgccagcccta 7702975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 28006360 - 28006483
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||| ||||| ||| | || || ||| |||| ||||||||||||||||||||||||  ||||||| |||| | ||||||| |||| |     
T  28006360 ctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactatt 28006459  T
Q  172 attgagttggctcagttcattgcc 195  Q
     | ||||||| || ||||||||||    
T  28006460 ttcgagttggttcggttcattgcc 28006483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 45581138 - 45581071
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||| |||||||| |||  ||| || |||||||| ||||||||||||||||||||||||    
T  45581138 ctcatttagttaatgaacttaattttccgctcaagttcaactcatttggttcatgaaccaagttcaac 45581071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 47602993 - 47602862
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | || | |||||| |||| || |||| |    
T  47602993 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 47602894  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || |||||||| || |||||    
T  47602893 aatcgagttggttcggttcattgtcagcccta 47602862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 45653560 - 45653494
Alignment:
Q  74 tcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| |||||||||||| |||||||| || |||  ||| ||||||||||||||||||||||||    
T  45653560 tcatttagctaacgaacttaacttttagctcaagttcggctcatttggttcatgaaccaagttcaac 45653494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 37441317 - 37441249
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  37441317 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 37441249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 23915727 - 23915660
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| |||| |||||||| ||| |||| || |||| ||| ||||||||||||||||||||||||    
T  23915727 ctcatttatttaatgaacttaattttcagctaaagttcagctcatttggttcatgaaccaagttcaac 23915660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 25125016 - 25124885
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| ||||| |||| ||| |||| || |||  ||| ||||||||||||||||||||||||   |||||| || | | ||||  | ||||||    
T  25125016 gctcaattagttcacgaaattaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaacttt 25124917  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  25124916 aatcgagttggttcggttcattgccagcccta 25124885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 32179867 - 32179998
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | ||| || |||| ||||||||||||||||   | || | |||||| |||| || |||| |    
T  32179867 gctcatttaattaacgaacttaattttcagctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactat 32179966  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  32179967 aatcgagttggttcggttcattgccagcccta 32179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 42937083 - 42937214
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || |||  ||| |||| |||||||||||||||| ||   |||||||| || | ||||  | |||| |    
T  42937083 gctcaattagttgacgaacttaattttaagctcaagttcggctcatttgattcatgaaccaagttcgacgaatcaattgttgaatcgaattacgaactct 42937182  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| |||||||||||||| |||||    
T  42937183 aatcgagttggttcagttcattgccagcccta 42937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 43087596 - 43087529
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| |||||||||||||  ||||| | || |||  ||||||||||||||||||||||||||||    
T  43087596 ctcatttaattaacgaacttaatctttagttcaagttcggctcgtttggttcatgaaccaagttcaac 43087529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 44596527 - 44596657
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||||||||| ||| || | || |||| ||| ||||||||||||||||| ||||||  || ||||||||| | || |  |||||| |     
T  44596527 ctcatttatttaacgaacttaattttcagttcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactatt 44596626  T
Q  172 attgagttggctcagttcattgccaacccta 202  Q
     | ||||||| || ||||||||||| |||||    
T  44596627 gtcgagttggttcggttcattgccagcccta 44596657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 30251437 - 30251494
Alignment:
Q  76 atttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaa 132  Q
    ||||||||||||||||||| |||||||| || ||||| || ||| |||||||||||||    
T  30251437 atttagttaacgaacttaatttttagctcaagttcaattcatttagttcatgaaccaa 30251494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 39802899 - 39802830
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||| ||| | || || ||| |||| |||||||||||||||| |||||||    
T  39802899 ggctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccatgttcaac 39802830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 15306501 - 15306569
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaa 138  Q
    |||||||||| |||| |||||||| |||  ||| || |||| ||| |||||||||||||||||||||||    
T  15306501 ggctcatttatttaatgaacttaattttccgctcaagttcagctcatttggttcatgaaccaagttcaa 15306569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 15662964 - 15663080
Alignment:
Q  78 ttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattga 176  Q
    |||||| |||||||||| ||| |||| || |||  ||| |||||| |||||||||||||| ||   |||||| | || ||||||  |||||| |||||||    
T  15662964 ttagttgacgaacttaattttcagctcaagttcggctcatttggtacatgaaccaagttcgacgaatcaattattgaattgaattacaaactctaattga 15663063  T
Q  177 gttggctcagttcattg 193  Q
    ||||| || ||||||||    
T  15663064 gttggttcggttcattg 15663080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 31816613 - 31816645
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||| ||||||||||||||||||||||||    
T  31816613 ttcaactcatttggttcatgaaccaagttcaac 31816645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 51432330 - 51432266
Alignment:
Q  76 atttagttaacgaacttaagttttagcttaatt-caactcgtttggttcatgaaccaagttcaac 139  Q
    ||||| |||||||  |||| ||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  51432330 atttatttaacgattttaattttcagcttaatttcaactcatttggttcatgaaccaagtacaac 51432266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 26218057 - 26218124
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||||||    
T  26218057 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaac 26218124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 1840818 - 1840686
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| || |||||||||| ||| |||| || |||| ||| ||||||||||||||||||||||||  || ||||||||| |||| |    |||| |    
T  1840818 gctcatttatttcacgaacttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgagttctgaactat 1840719  T
Q  171 aattgagttggctcagttcattgccaaccctag 203  Q
      | ||||||| || ||||||||||||||||||    
T  1840718 tgtcgagttggttcggttcattgccaaccctag 1840686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 18880201 - 18880269
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| ||||||| || | |||||| |||||||||||||||||||||    
T  18880201 gctcatttaattaacgaacttaattttcagcttaagtccagctcgttaggttcatgaaccaagttcaac 18880269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 14500836 - 14500769
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||| |||||||||||||||  ||||||| || |||  ||||||||||||||||||||||||||||    
T  14500836 ctcattcagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaac 14500769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 27906107 - 27906238
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||   | |  | |||||| |||| || |||| |    
T  27906107 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactat 27906206  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||| ||||||| || ||||||||||| |||||    
T  27906207 aatcgagttggttcggttcattgccagcccta 27906238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 41783335 - 41783402
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||| ||||||||||||||||||||||||    
T  41783335 ctcatttagttaacgaacttaatctttagctcaagttcggctcatttggttcatgaaccaagttcaac 41783402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 3801494 - 3801364
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttta 171  Q
    |||||||| ||||||||||||| ||| |||| || |||  ||| |||||||||||||||||||||||     |||||||||||| ||||  | |||| ||    
T  3801494 ctcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactata 3801395  T
Q  172 attgagttggctcagttcattgccaacccta 202  Q
     | ||||||| || ||||||||||| |||||    
T  3801394 ttcgagttggttcggttcattgccagcccta 3801364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 15933168 - 15933303
Alignment:
Q  71 ggctcatttagttaacgaacttaa--gt-tttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaa 166  Q
    |||||||||| |||||||||||||  || ||||||| |  |||||||| || |||||||||||||||||||||   | || |||||||| |||| || ||    
T  15933168 ggctcatttatttaacgaacttaatagtatttagctcatgttcaactcattaggttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaa 15933267  T
Q  167 ctttaattgagttggctcagttcattgccaacccta 202  Q
    || || | ||||||| || ||||||||||| |||||    
T  15933268 ctatactcgagttggttcggttcattgccagcccta 15933303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 39414190 - 39414273
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa--ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    ||||||||| ||||||||||||| ||||| |||||  |||| ||| || |||||||| ||||||||||||  || |||||||||    
T  39414190 gctcatttatttaacgaacttaatttttaacttaaagttcagctcattaggttcatggaccaagttcaacgagttaattgtcga 39414273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 11136136 - 11136070
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  |||||||||||| |||||||||||||||    
T  11136136 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttc-tgaaccaagttcaac 11136070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 19282245 - 19282163
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcga 153  Q
    |||||| || ||||||||| ||| ||| |||| || |||| ||| ||||||||||||||||||||||||  || |||||||||    
T  19282245 gctcatctacttaacgaacctaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcga 19282163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 2676031 - 2676159
Alignment:
Q  78 ttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattga 176  Q
    |||||| |||||||||| ||| |||| || ||| |||| ||||||||||||||| ||||| ||   ||||||||||  | ||||  | ||||||||| ||    
T  2676031 ttagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaacctagttcgacgaatcaattgtcggatcgaattacgaactttaatcga 2676130  T
Q  177 gttggctcagttcattgccaaccctagat 205  Q
     |||| |  ||||||| ||||||||||||    
T  2676131 attggtttggttcattaccaaccctagat 2676159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 34655045 - 34655112
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||||||| |||||||  ||||||| || ||| ||||||||||||||||||| |||||||||    
T  34655045 ctcatttagttaacaaacttaatctttagctcaagttcgactcgtttggttcatgaactaagttcaac 34655112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 43967520 - 43967587
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||||||||||||||||  ||||||| || |||  ||||||||||||||||||||| ||||||    
T  43967520 ctcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaaattcaac 43967587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 24854607 - 24854708
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactt 169  Q
    ||||| |||| |||||||  |||| ||| |||| || |||||||| |||||||||  ||||||||| |||  || |||||||||||||||| ||||||||    
T  24854607 ggctcgtttaattaacgagtttaattttcagctcaagttcaactcatttggttcacaaaccaagtttaacgagttaattgtcgagttgaatttcaaactt 24854706  T
Q  170 ta 171  Q
    ||    
T  24854707 ta 24854708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 11161581 - 11161649
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaac 139  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| |||||||||||||||||||||    
T  11161581 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 11161649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 9412619 - 9412524
Alignment:
Q  107 ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgccaacccta 202  Q
    |||| ||| ||||||||||||||||||||||||  ||  |||||||||| ||    |||||| |||| ||||||| || ||||||||||| |||||    
T  9412619 ttcagctcatttggttcatgaaccaagttcaacgagttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattgccagcccta 9412524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 34516192 - 34516270
Alignment:
Q  116 tttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaactttaattgagttggctcagttcattgc 194  Q
    ||||||| ||||| |||||||||    ||||||||||| ||||||  | ||||||||||||||||| || |||||||||    
T  34516192 tttggttgatgaatcaagttcaatgaatcaattgtcgaattgaattacgaactttaattgagttggttcggttcattgc 34516270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 27189212 - 27189148
Alignment:
Q  73 ctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttc 136  Q
    |||| |||||| |||||||||| ||| |||| || ||| |||| |||||||||||||||||||||    
T  27189212 ctcaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaaccaagttc 27189148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 11398 - 11464
Alignment:
Q  71 ggctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttc 136  Q
    |||||||||| ||||||||||||| ||||| ||||| |||| ||| |||||||||||||| ||||||    
T  11398 ggctcatttatttaacgaacttaatttttaacttaagttcacctcatttggttcatgaactaagttc 11464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 19305 - 19372
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaattcaa-ctcgtttggttcatgaaccaagttcaa 138  Q
    ||||||||| ||||||||||||| ||| |||| || || | |||||| ||||||||||||||||||||    
T  19305 gctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaa 19372  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 26752 - 26621
Alignment:
Q  72 gctcatttagttaacgaacttaagttttagcttaa-ttcaactcgtttggttcatgaaccaagttcaactcgtcaattgtcgagttgaatctcaaacttt 170  Q
    ||||| |||||| |||||||||| ||| |||| || ||| |||| |||| |||||||||||||||||||   ||| ||||||| | ||||  | |||| |    
T  26752 gctcaattagttgacgaacttaattttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactct 26653  T
Q  171 aattgagttggctcagttcattgccaacccta 202  Q
    ||||||||||| ||  ||||||| || |||||    
T  26652 aattgagttggttcgattcattgtcagcccta 26621  T

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Target: scaffold0444 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 864 - 830
Alignment:
Q  105 aattcaactcgtttggttcatgaaccaagttcaac 139  Q
    |||||||||| ||||||||||||||||||||||||    
T  864 aattcaactcatttggttcatgaaccaagttcaac 830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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