View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_28 (Length: 225)
Name: NF14875_low_28
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 13075550 - 13075355
Alignment:
| Q |
19 |
atgagccttttgagggagacacaactagagatagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatctgatggaag |
118 |
Q |
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| T |
13075550 |
atgagccttttgagggagacacaactagagacagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatttgatggaag |
13075451 |
T |
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| Q |
119 |
aaaaccaaataagtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
214 |
Q |
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| T |
13075450 |
aaaaccaaataagtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
13075355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 13079757 - 13079562
Alignment:
| Q |
19 |
atgagccttttgagggagacacaactagagatagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatctgatggaag |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13079757 |
atgagccttttgagggagacactactagagatagaattgagaaggaaattataaatcaaaagtttcaagagaatgttgatattggaatatttgatggaag |
13079658 |
T |
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| Q |
119 |
aaaaccaaataagtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079657 |
aaaaccaaataagtttcaagagatggaggaaactgaattgtccaaggaaaaagattcaacaattggaatgtctatgaagaaagtgaatggagaaaa |
13079562 |
T |
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