View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_29 (Length: 213)
Name: NF14875_low_29
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 6213496 - 6213292
Alignment:
| Q |
9 |
atgttttaactacttggacttatttttgtcatgtgacgtgacacaatgtatataaaaaatagatgaagacgttgtcatgtgatgcatgtgcagtaaataa |
108 |
Q |
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| T |
6213496 |
atgttttaactagttggacttatttttgtcatgtgacgtgacgcagtgtatataaaagatagatgaagacgttgtcatgtgatgcatgtgcagtaaataa |
6213397 |
T |
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| Q |
109 |
gtgaattgtattttattaatagtataatacgactatggaagctaatgaactatgattgtatatgtttgagaattttagatggagatgaaggtatgcagcc |
208 |
Q |
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| T |
6213396 |
gtgaattgtattttattagtagtataatacgactatggaagctaatgaactatgattgtatatgtttgagaattttagatggagatgaaggtatgcagcc |
6213297 |
T |
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| Q |
209 |
gggtt |
213 |
Q |
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| T |
6213296 |
gggtt |
6213292 |
T |
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