View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_7 (Length: 556)
Name: NF14875_low_7
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Original strand, 7774536 - 7775071
Alignment:
| Q |
6 |
aagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagagaaagatggattcgtcgcagtctgacaaaggca |
105 |
Q |
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| T |
7774536 |
aagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagagaaagatggattcgtcgcagtctgacaaaggca |
7774635 |
T |
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| Q |
106 |
gcgacagtgctcccaagaaatcaagatggaattttacttttagtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctg |
205 |
Q |
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| T |
7774636 |
gcgacagtgctcccaagaaatcaagatggaattttacttttagtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctg |
7774735 |
T |
|
| Q |
206 |
ttggaagtaagaatgaaacataaaatcagcaaaatgcataaattcagatatgatggtgaaagatgcaacaccatatcacaattatattcatttcaattct |
305 |
Q |
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| T |
7774736 |
ttggaagtaagaatgaaacataaaatcagcaaaatgcataaattcagatatgatggtgaaagatgcaacaccatatcacaattatattcatttcaattct |
7774835 |
T |
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| Q |
306 |
tacatcaactttaattcactgtggactaatatttctaagaaatttagatcttattagtgtcaaatttgttagtaactataattgcgttataattactaac |
405 |
Q |
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| T |
7774836 |
tacatcaactttaattcactgtggactaatatttctaagaaatttagatcttattagtgtcaaatttgttagtaattataattgcgttataattactaac |
7774935 |
T |
|
| Q |
406 |
aatttcatcaacaaattagtctttagtgtgtgctattaaaccattagcacacagtccttaaagaaaaacagattactccaatacggtacaaatatcataa |
505 |
Q |
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| T |
7774936 |
aatttcatcaacaaattagtctttagtgtgtgctattaaaccattagcacacagtccttaaagaaaaacagattactccaatacggtacaaatatcataa |
7775035 |
T |
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| Q |
506 |
taagttacatgaacaagaaagctggtgtctcatttg |
541 |
Q |
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| T |
7775036 |
taagttacatgaacaagaaagctggtgtctcatttg |
7775071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 7779415 - 7779487
Alignment:
| Q |
74 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaagatggaattttactttt |
146 |
Q |
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| T |
7779415 |
aaagatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatcaagatggaattttactttt |
7779487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 541
Target Start/End: Original strand, 7769439 - 7769503
Alignment:
| Q |
477 |
attactccaatacggtacaaatatcataataagttacatgaacaagaaagctggtgtctcatttg |
541 |
Q |
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| T |
7769439 |
attactccaatacggtacaaatatgataataagttatatgaacaagaaaactggtctttcatttg |
7769503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 7779521 - 7779583
Alignment:
| Q |
148 |
gtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctgttgga |
210 |
Q |
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| T |
7779521 |
gtctttgcttaaccattttgattatgtttctaattctttgcatcatttatgaaatctgttgga |
7779583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 7768822 - 7768911
Alignment:
| Q |
157 |
taaccattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagtaagaatgaaacataaaatcagcaaaatgcataaattc |
250 |
Q |
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| T |
7768822 |
taaccattttgattctatgtctaattccttacatcattgatgaagtatgttgg----tagagtgaaacatagaatcagcaaaatgtatgaattc |
7768911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 7768391 - 7768447
Alignment:
| Q |
74 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaag |
130 |
Q |
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| T |
7768391 |
aaagattgattcatcgcagtctaacaaaggcagcaacagtgcttccaggaaatcaag |
7768447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 12815222 - 12815099
Alignment:
| Q |
8 |
gaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagag---aaagatggattcgtcgcagtctgacaaaggc |
104 |
Q |
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||||||| ||||||||| |||||| ||||||||||||| | |||| || |||||||||||||| ||||| | ||| ||||| |||||||||| | |
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| T |
12815222 |
gaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagac |
12815123 |
T |
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| Q |
105 |
agcgacagtgctcccaagaaatca |
128 |
Q |
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||| |||||||| |||||||||| |
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| T |
12815122 |
agcagcagtgctcgcaagaaatca |
12815099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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