View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_8 (Length: 538)
Name: NF14875_low_8
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 41024599 - 41024087
Alignment:
| Q |
13 |
attatactcatattaaatttggaaccggtgatttttcccaagctgcaggaaatgggaaatccagaattagttcagatgtgcttagcacagttgatgaaaa |
112 |
Q |
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| T |
41024599 |
attatactcatattaaatttggaaccggtgatttttcccaagctgcaggaaatgggaaatccagaattagttcagatgtgcttagcacagttgatgaaaa |
41024500 |
T |
|
| Q |
113 |
gtaccctgatgttgatgtaagttccgaatcttctcatcaaacatacatgtatttttgtagtagctattgtaaaaggaactgatgctggcatgtatgatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41024499 |
gtaccctgatgttgatgtaagttccgaatcttctcatcaaacatacatgtatttttgtagtagctattgtaaaaggaactcatgctggcatgtatgatgt |
41024400 |
T |
|
| Q |
213 |
ttaaacccattttaaagcctcagactagtggttttggtaatatttttctaagttgctt----tacaatgagaatttgtaagaacttaaaaatagcgcatt |
308 |
Q |
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| T |
41024399 |
ttaaacccattttaaagcctcagactagtggttttggtaatatttttctaagttacttactttacaatgagaatttgtaagaacttaaaaatagtgcatt |
41024300 |
T |
|
| Q |
309 |
ggagttgttagtagatttcgtctttctgttaataaatatctagaaaggggaaagactttgaaggaaattgtatttatttgcctttctaagttactgaagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41024299 |
ggagttgttagtagatttcgtctttctgttaataaatatctagaaaggggaaagactttgaaggaaattgtatttatttgcctttctaagttactgaagt |
41024200 |
T |
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| Q |
409 |
agtattacaaatatgaacactaagtaagccattaaccataatacaatagtattgccttgttttgaggatctagtgatcaaggtctgcgaccacagtttgg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41024199 |
agtattacaaatatgaacactaagtaagccattaaccataatacaatagtattgccttgttttgaggatctagtgatcaaggtctgcgaccacagtttgg |
41024100 |
T |
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| Q |
509 |
tccacgtcatgtc |
521 |
Q |
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| T |
41024099 |
tccacgtcatgtc |
41024087 |
T |
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