View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14875_low_9 (Length: 484)
Name: NF14875_low_9
Description: NF14875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14875_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 32376202 - 32376661
Alignment:
| Q |
9 |
acatcatcatcagctgtatgagtagttgatccatctgcctcaactacagaaacaacattcaacaaagaacagagaaaatgaaatatatcaatcgcggcac |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
32376202 |
acatcttcatcagctgtatgagtagttgatccatctgcctcaactacagaaacaacattcaacaaagaacacagaaaatgaaatatatcaattgcggcac |
32376301 |
T |
|
| Q |
109 |
gaacgccataaccggatttcaaacccgtgttatcatcaacatcttctacgtctgattcagagtctccttccctatcattcccttcaatttcgggtaacct |
208 |
Q |
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| T |
32376302 |
gaacaccataaccggatttcaaacccgcgttatcatcaacatcttctacgtctgattcagaatctccttccctatcattcccttcaatttcaggtaacct |
32376401 |
T |
|
| Q |
209 |
tgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttgcacaacttgaaaacatgca |
308 |
Q |
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| T |
32376402 |
tgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttgcacaacttgaaaacatgca |
32376501 |
T |
|
| Q |
309 |
ttcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcattatccctgccaaaacctgtagcataagatttagcattttcttct |
408 |
Q |
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| T |
32376502 |
ttcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcattatccctgccaaaacctgtagcataagatttagcattttcttct |
32376601 |
T |
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| Q |
409 |
aaagaatttacacactttaattgggttgatcaatatccagcatagtcccaacattataat |
468 |
Q |
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| T |
32376602 |
aaagaatttacacactttaattgggttgatcaatatccagcatagtcccaacattataat |
32376661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 190 - 365
Target Start/End: Complemental strand, 23572437 - 23572262
Alignment:
| Q |
190 |
cttcaatttcgggtaaccttgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttg |
289 |
Q |
| |
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|||||||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
23572437 |
cttcaatttcaggtaacctagcaaatactgcttgaataagctcaagcatcgtgtaccttgaacttctttgtagtaaatctcctctgttcacagattgttg |
23572338 |
T |
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| Q |
290 |
cacaacttgaaaacatgcattcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcatt |
365 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
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| T |
23572337 |
cacaacttgaaaacatgcatccacaagtgtgcaaacagcttgatcagtgagtaaaattgaagctttatggtgcatt |
23572262 |
T |
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