View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14876_high_3 (Length: 359)
Name: NF14876_high_3
Description: NF14876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14876_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 45506584 - 45506792
Alignment:
| Q |
1 |
tgaagaaaacaagtgattatgtgaagaaaaagaaaatgctctnnnnnnntattcataatttaaattctttacaagtaataggcatgttcaaaaagtttaa |
100 |
Q |
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| T |
45506584 |
tgaagaaaacaagtgattatgtgaagaaaaagaaaatgctctaaaaaaatattcataatttaaattctttacaagtaataggcatgttcaaaaagtttaa |
45506683 |
T |
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| Q |
101 |
aagaccgagcttaattaaccatgaatcaaaatgaattgagtattgttgttgtacttgaaagatacctcatgaattgaatgtatagatctcataggagcta |
200 |
Q |
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| T |
45506684 |
aagaccgagcttaattaaccatgaatcaaaatgaattgagtattgttgttgtacttgaaacttacctcatgaattgactgtatagatctcataggagcta |
45506783 |
T |
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| Q |
201 |
cacttggtt |
209 |
Q |
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|||||||| |
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| T |
45506784 |
tacttggtt |
45506792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 45506865 - 45506901
Alignment:
| Q |
286 |
tcaattgatgtgattgaatactttttattttatttta |
322 |
Q |
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| T |
45506865 |
tcaattgatgtgattgaatactttttattttatttta |
45506901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 45512170 - 45512204
Alignment:
| Q |
325 |
tgtgtccaaataatatgaaagactttctcctctca |
359 |
Q |
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| T |
45512170 |
tgtgttcaaataatatgaaagactttctcctctca |
45512204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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