View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14876_low_2 (Length: 384)
Name: NF14876_low_2
Description: NF14876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14876_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 42733253 - 42733454
Alignment:
| Q |
17 |
gtttgtttagtcttccaaatccaatcctgtagcaagaggatatgcattcctttgtcatctaattcagactcacttcccaatatcatacaaaggaatcttc |
116 |
Q |
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| T |
42733253 |
gtttgtttagtcttccaaatccaatcctgtagcaagaggatatgcattcctttgtcatctaattcagactcacttcccaatatcatacaaaggaatcttc |
42733352 |
T |
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| Q |
117 |
ttaattattttggtcaattttaaacaaatctaacttgttgagtctattttaaaaattgatgcctcgttaatttagttactcctaattgagtctattttaa |
216 |
Q |
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| T |
42733353 |
ttaattattttggtcaattttaaacaaatctaacttgttgagtctattttaaaaattgatgcctcgttaatttagttactcctaattgagtctattttaa |
42733452 |
T |
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| Q |
217 |
at |
218 |
Q |
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|| |
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| T |
42733453 |
at |
42733454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 42733637 - 42733807
Alignment:
| Q |
210 |
attttaaatatgtcaatgggcatattggagcaatataataactcgttgaa-atttactgtatatgtttttctctatttttcttataatttattttccact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42733637 |
attttaaatatgtcaatgggcatattggagcaatataataactcgttgaatatttactgtatatgtttctctctatttttcttataatttattttccact |
42733736 |
T |
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| Q |
309 |
tcttacactcaaacaaaattgtctttgatagaaagctatttgtgaattacatccaaaaattacagaataat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
42733737 |
tcttacactcaaacaaaattgtctttgatagaaagctatttgtgaattacatccaaaaaatacacaataat |
42733807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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