View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14876_low_4 (Length: 341)
Name: NF14876_low_4
Description: NF14876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14876_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 56045804 - 56045483
Alignment:
| Q |
20 |
gtcagtatcacgtgtctatgattgcgattccttaattaatacatgtataagaaataagtttattctaaaggctttgtaagcagcctacctgccatgaaat |
119 |
Q |
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| T |
56045804 |
gtcagtatcacgtgtctatgattgcgattccttaattaatacatgtataagaaataagtttattctaaaggctttgtaagcagcctacctgccatgaaat |
56045705 |
T |
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| Q |
120 |
aatgctacatgagtgagggtcgctgtaaatcttgcgaaacctgatccaatagacaatgcgaagagaggactaaggtataacttgccatacttgttgtatg |
219 |
Q |
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| T |
56045704 |
aatgctacatgagtgagggtcgctgtaaatcttgcgaaacctgatccaatagacaatgcgaagagaggactaaggtataacttgccatacttgttgtatg |
56045605 |
T |
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| Q |
220 |
catcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcct |
319 |
Q |
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| T |
56045604 |
catcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcct |
56045505 |
T |
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| Q |
320 |
agcatcaaaagtgttaaacctc |
341 |
Q |
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| T |
56045504 |
agcatcaaaagtgttaaacctc |
56045483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 338
Target Start/End: Complemental strand, 55707196 - 55706946
Alignment:
| Q |
98 |
agcagcctacctgccatgaaataatgctacatgagtgagggtcgctgtaaatcttgcgaaacctgatccaatagacaatgcgaagagaggactaaggtat |
197 |
Q |
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| T |
55707196 |
agcagcctaccagccatgaaacagtgctacatgagtgagggttaccttaaatcttgtgaaacctgatctaatagataatgcaaagtcagggctgaggtat |
55707097 |
T |
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| Q |
198 |
aacttgccatacttgttgtatgca---------tcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttgacgtga |
288 |
Q |
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| T |
55707096 |
aacttgccatacttgttgtatgcaatgcatgcatcaatgttaagaacatattccttggttaagatcttcgtagtgtcaaccttttgtccactggatgtga |
55706997 |
T |
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| Q |
289 |
acaactgattagagaatataggaaacttcctagcatcaaaa-gtgttaaac |
338 |
Q |
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| T |
55706996 |
acaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaac |
55706946 |
T |
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