View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14877_high_10 (Length: 366)

Name: NF14877_high_10
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14877_high_10
NF14877_high_10
[»] chr7 (3 HSPs)
chr7 (16-358)||(39980354-39980689)
chr7 (327-357)||(7702954-7702984)
chr7 (266-318)||(22541718-22541770)
[»] chr8 (2 HSPs)
chr8 (290-357)||(34746431-34746497)
chr8 (299-359)||(22788908-22788967)
[»] chr4 (1 HSPs)
chr4 (261-355)||(52030754-52030847)
[»] chr2 (1 HSPs)
chr2 (278-353)||(38260432-38260506)
[»] chr1 (1 HSPs)
chr1 (266-355)||(3885657-3885746)
[»] chr5 (1 HSPs)
chr5 (291-355)||(35650270-35650333)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 39980689 - 39980354
Alignment:
Q  16 gagccttctttacggttttgtcatggtcaaaataatcgttgcttacaaacaccagttattattattttannnnnnnnaacaatatgatcattttagttat 115  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||           |||||||||||||||||||||||    
T  39980689 gagccttctttacggctttgccatggtcaaaataatcgttgcttacaaacaccagttatttttttt-----------aacaatatgatcattttagttat 39980601  T
Q  116 acttccaaaaggttggtgtcttctcaaaccagtgatttttagtataagacataaaatggtcgtaataaaaaaccaaaatgaccggatattatttacgttt 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39980600 acttccaaaaagttggtgtcttctcaaaccagtgatttttagtataagacataaaatggtcgtaataaaaaaccaaaatgaccagatattatttacgttt 39980501  T
Q  216 ttgttaatattaggaaaaaacttatatttct----atttgttcctataattttggagtcaagattctctccattttagatctccttcatttcttccattt 311  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39980500 ttgttaatattaggaaaaaacttatatttcttacaatttgttcctataattttgaagtcaagattctctccattttagatctccttcatttcttccattt 39980401  T
Q  312 gaagagacatggacaacaataaaatttaaaaataattaatgatgatg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39980400 gaagagacatggacaacaataaaatttaaaaataattaatgatgatg 39980354  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 357
Target Start/End: Original strand, 7702954 - 7702984
Alignment:
Q  327 acaataaaatttaaaaataattaatgatgat 357  Q
    |||||||||||||||||||||||||||||||    
T  7702954 acaataaaatttaaaaataattaatgatgat 7702984  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 22541718 - 22541770
Alignment:
Q  266 gagtcaagattctctccattttagatctccttcatttcttccatttgaagaga 318  Q
    |||||||||| |||||||||||  |  | ||||||||||||||||||||||||    
T  22541718 gagtcaagatcctctccattttgtacattcttcatttcttccatttgaagaga 22541770  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 34746497 - 34746431
Alignment:
Q  290 atctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatgat 357  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||    
T  34746497 atctccttcatttcttccatttgaagagatatagac-acaataaaatttaaaaatgattaatgatgat 34746431  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 22788908 - 22788967
Alignment:
Q  299 atttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatgatgt 359  Q
    |||||||| ||||||||||| ||| ||| ||||||||||| ||||||||| ||||| ||||    
T  22788908 atttcttcaatttgaagagatatgaaca-caataaaatttgaaaataattgatgataatgt 22788967  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 52030847 - 52030754
Alignment:
Q  261 ttttggagtcaagattctctccattttagatctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatg 355  Q
    |||| ||||||||||  ||| ||||||| ||||| | || ||||| |||||| ||||| || ||||| |||||||||||||||||||||||||||    
T  52030847 tttttgagtcaagatattctacattttaaatctcttccaattctttcatttggagagatatagacaa-aataaaatttaaaaataattaatgatg 52030754  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 38260432 - 38260506
Alignment:
Q  278 tctccattttagatctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatga 353  Q
    |||||||||| |||||||| ||||||||||||||||| ||| |   |  |||||||||||||||||||||||||||    
T  38260432 tctccattttggatctcctccatttcttccatttgaaaagata-aaaatacaataaaatttaaaaataattaatga 38260506  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 3885657 - 3885746
Alignment:
Q  266 gagtcaagattctctccattttagatctccttcatttcttccatttg-aagagacatggacaacaataaaatttaaaaataattaatgatg 355  Q
    |||||||||| ||| |||||||  ||||| | ||||||||||||||| || ||| | |||| ||||| |||||||||||||||||||||||    
T  3885657 gagtcaagatcctccccattttgtatctcttccatttcttccatttgaaaaagataaggac-acaattaaatttaaaaataattaatgatg 3885746  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 35650270 - 35650333
Alignment:
Q  291 tctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatg 355  Q
    |||||| |||||||| |||||||||||| ||  |||  || ||||||||||||||||||||||||    
T  35650270 tctcctccatttctttcatttgaagagatataaacataaa-aaaatttaaaaataattaatgatg 35650333  T

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