View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14877_high_11 (Length: 316)
Name: NF14877_high_11
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 26795653 - 26795347
Alignment:
| Q |
1 |
ctcaatccttgatctctggggctttttctataatccaacaatccctctcacttggatgttttcctcgtgtgaaaatcgtacacacatcaatcaagtatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795653 |
ctcaatccttgatctctggggctttttctataatccaacaatccctctcacttggatgttttcctcgtgtgaaaatcgtacacacatcaatcaagtatcc |
26795554 |
T |
|
| Q |
101 |
aggacaagtctacatccctgaaattaatttccttctcatgatttcttgtatcgcagtcactgctgtatttaaaactacaatagagatcggcaatgcttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26795553 |
aggacaagtctacatccctgaaattaatttccttctcatgatttcttgtatcgcagtcactgctgtatttaaaactacaatagaaatcggcaatgcttat |
26795454 |
T |
|
| Q |
201 |
ggtaacattcccctcattgacggtgtaaaaaatatttattgatatttgtggaattattatcttaaatttctttaatgattacagggattgcagttgtaat |
300 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795453 |
ggtaacaatccactcattgacagtgtaaaaaatatttattgatatttgtggaatgattatcttaaatttctttaatgattacagggattgcagttgtaat |
26795354 |
T |
|
| Q |
301 |
gatgatg |
307 |
Q |
| |
|
| ||||| |
|
|
| T |
26795353 |
ggtgatg |
26795347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 44179378 - 44179173
Alignment:
| Q |
1 |
ctcaatccttgatctctggggctttttctataatccaacaatccctctcacttggatgttttcctcgtgtgaaaatcgtacacacatcaatcaagtatcc |
100 |
Q |
| |
|
||||| || |||| || ||| |||| |||||||||||||||||| | ||| | |||||||||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
44179378 |
ctcaagccatgatatcagggactttctctataatccaacaatccttatcattgggatgttttcctcgtgtgcaaattgtacatacatcagccaagtatga |
44179279 |
T |
|
| Q |
101 |
aggacaagtctacatccctgaaattaatttccttctcatgatttcttgtatcgcagtcactgctgtatttaaaactacaatagagatcggcaatgcttat |
200 |
Q |
| |
|
|||||| || || ||||| ||| |||||| | | ||||||||| ||||||| || |||||| || || ||||| ||| | | || |||||||||||| |
|
|
| T |
44179278 |
aggacaggtttatatcccagaagttaattacatcctcatgattgcttgtattgccatcactgttggtttcaaaaccacagcaaaaattggcaatgcttat |
44179179 |
T |
|
| Q |
201 |
ggtaac |
206 |
Q |
| |
|
|||||| |
|
|
| T |
44179178 |
ggtaac |
44179173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University