View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14877_low_10 (Length: 366)
Name: NF14877_low_10
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 39980689 - 39980354
Alignment:
| Q |
16 |
gagccttctttacggttttgtcatggtcaaaataatcgttgcttacaaacaccagttattattattttannnnnnnnaacaatatgatcattttagttat |
115 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
39980689 |
gagccttctttacggctttgccatggtcaaaataatcgttgcttacaaacaccagttatttttttt-----------aacaatatgatcattttagttat |
39980601 |
T |
|
| Q |
116 |
acttccaaaaggttggtgtcttctcaaaccagtgatttttagtataagacataaaatggtcgtaataaaaaaccaaaatgaccggatattatttacgttt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39980600 |
acttccaaaaagttggtgtcttctcaaaccagtgatttttagtataagacataaaatggtcgtaataaaaaaccaaaatgaccagatattatttacgttt |
39980501 |
T |
|
| Q |
216 |
ttgttaatattaggaaaaaacttatatttct----atttgttcctataattttggagtcaagattctctccattttagatctccttcatttcttccattt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980500 |
ttgttaatattaggaaaaaacttatatttcttacaatttgttcctataattttgaagtcaagattctctccattttagatctccttcatttcttccattt |
39980401 |
T |
|
| Q |
312 |
gaagagacatggacaacaataaaatttaaaaataattaatgatgatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980400 |
gaagagacatggacaacaataaaatttaaaaataattaatgatgatg |
39980354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 357
Target Start/End: Original strand, 7702954 - 7702984
Alignment:
| Q |
327 |
acaataaaatttaaaaataattaatgatgat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7702954 |
acaataaaatttaaaaataattaatgatgat |
7702984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 22541718 - 22541770
Alignment:
| Q |
266 |
gagtcaagattctctccattttagatctccttcatttcttccatttgaagaga |
318 |
Q |
| |
|
|||||||||| ||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
22541718 |
gagtcaagatcctctccattttgtacattcttcatttcttccatttgaagaga |
22541770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 34746497 - 34746431
Alignment:
| Q |
290 |
atctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatgat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||| |
|
|
| T |
34746497 |
atctccttcatttcttccatttgaagagatatagac-acaataaaatttaaaaatgattaatgatgat |
34746431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 22788908 - 22788967
Alignment:
| Q |
299 |
atttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatgatgt |
359 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| ||||||||||| ||||||||| ||||| |||| |
|
|
| T |
22788908 |
atttcttcaatttgaagagatatgaaca-caataaaatttgaaaataattgatgataatgt |
22788967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 52030847 - 52030754
Alignment:
| Q |
261 |
ttttggagtcaagattctctccattttagatctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatg |
355 |
Q |
| |
|
|||| |||||||||| ||| ||||||| ||||| | || ||||| |||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
52030847 |
tttttgagtcaagatattctacattttaaatctcttccaattctttcatttggagagatatagacaa-aataaaatttaaaaataattaatgatg |
52030754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 38260432 - 38260506
Alignment:
| Q |
278 |
tctccattttagatctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatga |
353 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
38260432 |
tctccattttggatctcctccatttcttccatttgaaaagata-aaaatacaataaaatttaaaaataattaatga |
38260506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 3885657 - 3885746
Alignment:
| Q |
266 |
gagtcaagattctctccattttagatctccttcatttcttccatttg-aagagacatggacaacaataaaatttaaaaataattaatgatg |
355 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | ||||||||||||||| || ||| | |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3885657 |
gagtcaagatcctccccattttgtatctcttccatttcttccatttgaaaaagataaggac-acaattaaatttaaaaataattaatgatg |
3885746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 35650270 - 35650333
Alignment:
| Q |
291 |
tctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatg |
355 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||| || |||||||||||||||||||||||| |
|
|
| T |
35650270 |
tctcctccatttctttcatttgaagagatataaacataaa-aaaatttaaaaataattaatgatg |
35650333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University