View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14877_low_17 (Length: 226)
Name: NF14877_low_17
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_17 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0287 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 15754 - 15964
Alignment:
| Q |
16 |
ccaagagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754 |
ccaagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgagg |
15853 |
T |
|
| Q |
116 |
catggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatttggtgcagggcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15854 |
catggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgataccatttggtgcagggcg |
15953 |
T |
|
| Q |
216 |
tagaatttgcc |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
15954 |
tagaatttgcc |
15964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 3630331 - 3630121
Alignment:
| Q |
16 |
ccaagagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630331 |
ccaagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgagg |
3630232 |
T |
|
| Q |
116 |
catggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatttggtgcagggcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3630231 |
catggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgataccatttggtgcagggcg |
3630132 |
T |
|
| Q |
216 |
tagaatttgcc |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
3630131 |
tagaatttgcc |
3630121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 3619952 - 3619745
Alignment:
| Q |
19 |
agagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgaggcat |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||| |
|
|
| T |
3619952 |
agagagaccagtaaaagtttcacactaaatggatataaaatagaaccaaaaacatcagtgtttgtgagtatttggtctattcatagggaccccgagacat |
3619853 |
T |
|
| Q |
119 |
ggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatttggtgcagggcgtag |
218 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||| || ||||| |||||||||||||| |
|
|
| T |
3619852 |
ggaaagaccccgatgagttttatccagagagattcttaaacaatgatatagattttaagggacaaaatttcgagtttattccattcggtgcagggcgtag |
3619753 |
T |
|
| Q |
219 |
aatttgcc |
226 |
Q |
| |
|
||| |||| |
|
|
| T |
3619752 |
aatatgcc |
3619745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 31039527 - 31039401
Alignment:
| Q |
100 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgatac |
199 |
Q |
| |
|
||||| ||||| || | |||||| ||||| || ||||||||||||||||||||| || | ||||||||||| || |||| |||||||||| |||| | |
|
|
| T |
31039527 |
catagagacccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattc |
31039428 |
T |
|
| Q |
200 |
catttggtgcagggcgtagaatttgcc |
226 |
Q |
| |
|
| |||||| | ||||| |||||||||| |
|
|
| T |
31039427 |
cgtttggttctgggcgaagaatttgcc |
31039401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 31053017 - 31052891
Alignment:
| Q |
100 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgatac |
199 |
Q |
| |
|
||||| ||||| || | |||||| ||||| || ||||||||||||||||||||| || | ||||||||||| || |||| |||||||||| |||| | |
|
|
| T |
31053017 |
catagagacccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattc |
31052918 |
T |
|
| Q |
200 |
catttggtgcagggcgtagaatttgcc |
226 |
Q |
| |
|
| |||||| | ||||| |||||||||| |
|
|
| T |
31052917 |
cgtttggttctgggcgaagaatttgcc |
31052891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 31071834 - 31071743
Alignment:
| Q |
115 |
gcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatttgg |
206 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||| || | ||||||||||| || |||| |||||| ||| |||| |||||||| |
|
|
| T |
31071834 |
gcatggaaggatccagaagagttttatccagagagattcataggtagtgatatagatttaaaaggacaagatttcgagctgattccatttgg |
31071743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 9400323 - 9400285
Alignment:
| Q |
118 |
tggaaagatcccgacgagttttatccagagagattctta |
156 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
9400323 |
tggaaagatccagaagagttttatccagagagattctta |
9400285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University