View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14877_low_19 (Length: 201)
Name: NF14877_low_19
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 25094571 - 25094759
Alignment:
| Q |
1 |
accctcggatgtcagatgaattccatccctattaaacaccactcaaggaaatgaaggaagaataaacacatttgaagtgttttcaattaaggggcatata |
100 |
Q |
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| T |
25094571 |
accctcagatgtcagatgaattccatccctatcaaacaccactcaaggaaatgaaggaagaataaacacatttgaagttttttcaattaaggggcatata |
25094670 |
T |
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| Q |
101 |
tgagagcaaacttacgtgaagcaaacatttcgccaattatcccttttttggattgcagaccacagatcaatggccttgatattcatctc |
189 |
Q |
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| T |
25094671 |
tgagagcaaacttacgtgaagcaaacatttcgccagttatcccttttttggattgcagaccacagatcaatggccttgatattcatctc |
25094759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 25071301 - 25071380
Alignment:
| Q |
110 |
acttacgtgaagcaaacatttcgccaattatcccttttttggattgcagaccacagatcaatggccttgatattcatctc |
189 |
Q |
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| T |
25071301 |
acttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctc |
25071380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 25062588 - 25062677
Alignment:
| Q |
100 |
atgagagcaaacttacgtgaagcaaacatttcgccaattatcccttttttggattgcagaccacagatcaatggccttgatattcatctc |
189 |
Q |
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| T |
25062588 |
atgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctc |
25062677 |
T |
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