View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14877_low_2 (Length: 509)
Name: NF14877_low_2
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 34 - 327
Target Start/End: Original strand, 5772345 - 5772630
Alignment:
| Q |
34 |
cccctaacaaagtatgacttattatgaaagaatgtactatatatctttatatctttaaatgtacgaagcaataagcaatatacacttgctttctcatctc |
133 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
5772345 |
cccctaataaagtgtgacttattatgaaagaatgtactatatatctttatatctttaaatgcacaaagcaata-------tacacttgctttctcatctc |
5772437 |
T |
|
| Q |
134 |
tagtaattattattcttttttaattatcatgttccttctctaactctgcttccacannnnnnnnaaacaacatattattattaaaagctataccacataa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
5772438 |
tagtaattattattcttttttaattatcatgttccttctctaactctgctttcacattttttttaaacaacatattattattaaaagctataccacataa |
5772537 |
T |
|
| Q |
234 |
ttttgttgaaaacaacacattgttagcataattcaaaagactttggtgtactgaaaaagtcatacttatttttagattttatacatgacatgac |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
5772538 |
ttttgttgaaaacaacacattgttagcataattcaaaagactttgg-gtactaaaaaagtcatacttatttttagattttatatatgacatgac |
5772630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 327
Target Start/End: Original strand, 5777972 - 5778264
Alignment:
| Q |
34 |
cccctaacaaagtatgacttattatgaaagaatgtactatatatctttatatctttaaatgtacgaagcaataagcaatatacacttgctttctcatctc |
133 |
Q |
| |
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|||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
5777972 |
ccccaaacaaagtgtgacttattatgaaataatgtagtatatatctttatatctttaaatgaacaaagcaataagcaatatacacttgctttctcatctc |
5778071 |
T |
|
| Q |
134 |
tagtaattattattcttttttaattatcatgttccttctctaactctgcttccaca--nnnnnnnnaaacaacatattattattaaaagctataccacat |
231 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
5778072 |
tagtaatttttattcctttttaattatcatgttccttctctaactctgcttccacatttttttttgaaacaaca---aattattaaaagctataccacat |
5778168 |
T |
|
| Q |
232 |
aattttgttgaaaacaacacattgttagcataattcaaaagactttggtgtactgaaaaagtcatacttatttttagattttatacatgacatgac |
327 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |
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| T |
5778169 |
aattttgttgaaaacaatacattgttagcataattcaaaagactttggtgtactaaaacagtcatacttatttttagattttatatatgacatgac |
5778264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 315
Target Start/End: Complemental strand, 5797794 - 5797534
Alignment:
| Q |
57 |
atgaaagaatgtactatatatctttatatctttaaatgtacgaagcaataagcaatatacacttgctttctcatctctagtaattattattcttttttaa |
156 |
Q |
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|
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
5797794 |
atgaaagaatgtgctatatatctttatatcttgaaatgtacaaagcaataagcaatatatacttgctttctcatctctagtaattattattcctttttaa |
5797695 |
T |
|
| Q |
157 |
ttatcatgttccttctctaactctgcttccaca-----nnnnnnnnaaacaacatattattattaaaagctataccacataattttgttgaaaacaacac |
251 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| || |
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| T |
5797694 |
ttatcatgttccttctctaactctgcttccacatttttttttgttgaaacaaca---tattattaaaaactataccacataattttgttgaaaacaatac |
5797598 |
T |
|
| Q |
252 |
attgttagcataattcaaaagactttggtgtactgaaaaagtcatacttatttttagattttat |
315 |
Q |
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| T |
5797597 |
attgttagcataattcaaaagactttggtgtactaaaaaagtcatacttatttttagattttat |
5797534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 5772731 - 5772806
Alignment:
| Q |
430 |
tttttaattcgagaatgaaactctttttagggaggtagtattataaataaataaatattaattatatagtattatg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5772731 |
tttttaattcgagaatgaaactctttttagggaggtagtattataaataaataaatattaattatatagtattatg |
5772806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 5795768 - 5795844
Alignment:
| Q |
111 |
atatacactt-gctttctcatctctagtaattattattcttttttaattatcatgttccttctctaactctgcttccaca |
189 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||| |
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| T |
5795768 |
atatacactttgctttctcatctctagtaattatt---cctttttaattatcatgttccttctctaactttacttccaca |
5795844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 5797855 - 5797811
Alignment:
| Q |
27 |
ttgcaaccccctaacaaagtatgacttattatgaaagaatgtact |
71 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
5797855 |
ttgcaaccccctaacaaagtgtgacttataatgaaagaatgtact |
5797811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 5815716 - 5815674
Alignment:
| Q |
27 |
ttgcaaccccctaacaaagtatgacttattatgaaagaatgta |
69 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||| |
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|
| T |
5815716 |
ttgcaacccactaacaaagtgtgacgtattatgaaagaatgta |
5815674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 5815358 - 5815317
Alignment:
| Q |
27 |
ttgcaaccccctaacaaagtatgacttattatgaaagaatgt |
68 |
Q |
| |
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||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
5815358 |
ttgcaaccctctaataaagtgtgacttattatgaaagaatgt |
5815317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 47118393 - 47118322
Alignment:
| Q |
209 |
tattattaaaagctataccacataattttgttgaaaacaacacattgttagcataattcaaaagactttggtg |
281 |
Q |
| |
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||||||| |||||| || ||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||| |
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| T |
47118393 |
tattattcaaagctgcactacataattttgttgaaa-caatacattgttaacataattcaaaagacattggtg |
47118322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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