View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14877_low_3 (Length: 465)
Name: NF14877_low_3
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 14 - 463
Target Start/End: Original strand, 23849793 - 23850242
Alignment:
| Q |
14 |
attattactatctgaattttatttcattttgttagtcctttaagcaagatttacattattgatgactaggtaactttattggcataacaaaggaaatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23849793 |
attattactatctgaattttatttcattttgttagtcctttaagcaagatttacattattgatgactaggtaactttattggcataacaaaggaaatttt |
23849892 |
T |
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| Q |
114 |
aaaactacatttcacatagaagtaaagtaactattacacaataaaaatacaccatatacatacattttcagttgaaatattcacaggagcaatccaaaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23849893 |
aaaactacatttcacatagaagtaaagtaactattacacaataaaaatacaccatatacatacattttcagttgaaatattcacaggagcaatccaaaaa |
23849992 |
T |
|
| Q |
214 |
ccaagataaagacaatcatgtttcacaaatcaacagggcttcccgtacatattttctttaacctattttgttacattttctttaaaaccaatgaatttaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23849993 |
ccaagataaagacaatcatgtttcacaaatcaacagggcttcccgtacatattttctttaacctattttgttacattttctttaaaaccaatgaatttaa |
23850092 |
T |
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| Q |
314 |
agtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagtaaaaccacaactt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850093 |
agtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagtaaaaccacaactt |
23850192 |
T |
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| Q |
414 |
ctcactcctattttgtttaccatcatcatcatcatctccactttcatctc |
463 |
Q |
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| T |
23850193 |
ctcactcctattttgtttaccatcatcatcatcatctccactttcatctc |
23850242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 302 - 463
Target Start/End: Original strand, 23749377 - 23749541
Alignment:
| Q |
302 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
401 |
Q |
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|||||||||| ||||||||| |||||||| |||||||| ||| || ||||||| || || |||||||||| | ||||||||||||||||| |||||||| |
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| T |
23749377 |
caatgaatttgaagtaagcaaacctccaacccttcttcaacaagaaaactccaataaaaacccaaaagccagtagcaaatccaagtgctaccacaaagta |
23749476 |
T |
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| Q |
402 |
aaaccacaacttctcactcctattttgtttaccat---catcatcatcatctccactttcatctc |
463 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23749477 |
aaaccacaatttctcactcctattttgtttaccatcaccatcatcatcatctccactttcatctc |
23749541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 302 - 443
Target Start/End: Original strand, 22616782 - 22616923
Alignment:
| Q |
302 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
401 |
Q |
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||||||| ||||||||||||| ||||| || |||||||| ||| || ||||||| || || |||||||||| | |||||||||| |||||||||||| || |
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| T |
22616782 |
caatgaaattaaagtaagcatccctccgacccttcttcaacaagaaaactccaataaaaacccaaaagccagtagcaaatccaattgctacaacaaaata |
22616881 |
T |
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| Q |
402 |
aaaccacaacttctcactcctattttgtttaccatcatcatc |
443 |
Q |
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|||||||| |||||| ||||| ||||||||||||||||| |
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| T |
22616882 |
aaaccacagtttctcagccctatcatgtttaccatcatcatc |
22616923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 463
Target Start/End: Complemental strand, 20574570 - 20574412
Alignment:
| Q |
302 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
401 |
Q |
| |
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||||||||||||||||||||||||| | || |||||||| ||| || ||||||| || | |||||| ||| | ||||| |||||| |||| |||||||| |
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| T |
20574570 |
caatgaatttaaagtaagcatgccttcgacccttcttcaacaagaaaactccaataaagacccaaaacccagtagcaaacccaagtactaccacaaagta |
20574471 |
T |
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| Q |
402 |
aaaccacaacttctcactcctattttgtttaccatcatcatcatcatctccactttcatctc |
463 |
Q |
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||||||||| |||||| | |||| ||||||| |||||||| |||||||||||||||||| |
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| T |
20574470 |
aaaccacaatttctcagttctatcatgtttactatcatcat---catctccactttcatctc |
20574412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 22616580 - 22616640
Alignment:
| Q |
15 |
ttattactatctgaattttatttcattttgttagtcctttaagcaagatttacattattga |
75 |
Q |
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||||||| |||||||||| ||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
22616580 |
ttattaccatctgaatttcatttcattttgctaggcctctaagcaagatttacattattga |
22616640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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