View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14877_low_5 (Length: 450)
Name: NF14877_low_5
Description: NF14877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14877_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 41827474 - 41827204
Alignment:
| Q |
9 |
cgaagaatatgcaataattaatgtaggataattatcaagaagtgaatataaagcaacaagtaattgatttgaaatggacaagtaataagtaacaataaat |
108 |
Q |
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| T |
41827474 |
cgaaaaatatgcaataattaatgcaggataattatcaagaagtgaatataaagcaacaagtaattgatttgaaatggacaagtaataagtaacaataagt |
41827375 |
T |
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| Q |
109 |
aagtaactaaataatttgattcaagtggttaatgaacgtcagcaaacaacaaaattgttaagaaaatctaagtttgaattatgtgtgaagnnnnnnnaaa |
208 |
Q |
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| T |
41827374 |
aagtaactaaataatttgattcaaatggttaatgaactttagcaaacaacaaaattgttaagaaaatctaaatttgaattctgtgtgaagtttttttaaa |
41827275 |
T |
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| Q |
209 |
ccaaactttaattactttttcggttaaactttgaattatcaaagtctatttttgaagatagtgctttcttt |
279 |
Q |
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| T |
41827274 |
ccaaactttaattactttttcggttaaactttgaattatcaaagtctatttttgaagatagtgctttcttt |
41827204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 41827190 - 41827110
Alignment:
| Q |
354 |
tagcgatagtactttgcatcctcaccatactatgttttcttcttcatttcataatttaactttagtctttatacatattct |
434 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41827190 |
tagcgatagtactttgcatccacaccataatatgttttcttcttcatttcataatttaactttagtctttatacatattct |
41827110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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