View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_high_1 (Length: 745)
Name: NF14878_high_1
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 1 - 739
Target Start/End: Original strand, 46471256 - 46471973
Alignment:
| Q |
1 |
catccaaaaatgaccggttcacatattagagctatactcattactc-actgtaatttttggagtttcctgcttagaaccttgggttatactcggtttcct |
99 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471256 |
catccaaaaatgaccggttcacagattagagctatactcattactctactgtaatttttggagtttcctgcttagaaccttgggttatactcggtttcct |
46471355 |
T |
|
| Q |
100 |
gattagaattgggacaaactcatattgtaaatgtcattctattagattaatatctatagttttagtattggtatgatgccgaaattagccatcatcaaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46471356 |
gattagaattgggacaaactcatattgtaaatgtcattctattagattaatatctatagttttagtattggtatgatgccgaaattggccatcatcaaga |
46471455 |
T |
|
| Q |
200 |
aacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgaaaatacagtattacaagatgagag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46471456 |
aacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgtaaatacagtattacaagatgagag |
46471555 |
T |
|
| Q |
300 |
ggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaatggtattgtgtgt |
399 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471556 |
ggagat--------------tcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaatggtattgtgtgt |
46471641 |
T |
|
| Q |
400 |
gtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggtctaaaaatgaaatattactaattgt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46471642 |
gtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggcctaaaaatgaaatattactaattgt |
46471741 |
T |
|
| Q |
500 |
gggagtcattagtatttctacattttaatgttatacaatttgatcaatttggatttcgttgtctattgttcagttctgcattgg-acggcgagtgtggtt |
598 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
46471742 |
gggagtcattagtatttctgcattttaatgttata---------caatttggatttcgttgtctattgttcagttctgcattggaacggcaagtgtggtt |
46471832 |
T |
|
| Q |
599 |
tcctatctgcaaacctttatgctaagagtgtttttggtgaagatgctttggcaaatttgagcattgaaaagcaagcagatggtaaattgagtggatacat |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471833 |
tcctatctgcaaacctttatgctaagagtgtttttggtgaagatgctttggcgaatttgagcattgaaaagcaagcagatggtaaattgagtggatacat |
46471932 |
T |
|
| Q |
699 |
cacagtaagaagtaaaactgagggaattgctctgagtcttg |
739 |
Q |
| |
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|
| T |
46471933 |
cacagtaagaagtaaaactgagggaattgctctgagtcttg |
46471973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 254 - 395
Target Start/End: Original strand, 1475170 - 1475311
Alignment:
| Q |
254 |
attttatgttataggttgctgaaaatacagtattacaagatgagagggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccacc |
353 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1475170 |
atttcatgttataggttgctgtaaatacagtattgcaagacgagagggagtttctgggccacattatcaagtctacaaatatgaagtgcctgactccacc |
1475269 |
T |
|
| Q |
354 |
gtgagttcctttaacttgcatacactttatgaatggtattgt |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || |||||| |
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| T |
1475270 |
gtgagttcctttaacttgcataaactttatgactgttattgt |
1475311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 545 - 739
Target Start/End: Original strand, 1475489 - 1475683
Alignment:
| Q |
545 |
aatttggatttcgttgtctattgttcagttctgcattggacggcgagtgtggtttcctatctgcaaacctttatgctaagagtgtttttggtgaagatgc |
644 |
Q |
| |
|
||||||| || | |||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||| || ||||| |||||||||||||| |||||||| |
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|
| T |
1475489 |
aatttggtttacattgtctcttgttcagctctgcattggaaggcgagtgtggttttctagctgcaaatctgtatgcaaagagtgtttttggggaagatgc |
1475588 |
T |
|
| Q |
645 |
tttggcaaatttgagcattgaaaagcaagcagatggtaaattgagtggatacatcacagtaagaagtaaaactgagggaattgctctgagtcttg |
739 |
Q |
| |
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| | | ||| |||||||||| |||||| | |||||||||||||| || || |||| | ||||||||||||| ||||||||||||||||||||| |
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|
| T |
1475589 |
tcttgtgaatgtgagcattgagaagcaatccgatggtaaattgagcggttatatcagaataagaagtaaaacccagggaattgctctgagtcttg |
1475683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 535 - 739
Target Start/End: Original strand, 1483607 - 1483811
Alignment:
| Q |
535 |
caatttgatcaatttggatttcgttgtctattgttcagttctgcattggacggcgagtgtggtttcctatctgcaaacctttatgctaagagtgtttttg |
634 |
Q |
| |
|
||||||| | ||||||| || | |||||| |||||||| ||||||||||| |||||||||||||| ||| |||| || || ||||| ||||||||||||| |
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|
| T |
1483607 |
caatttgtttaatttggtttacattgtctcttgttcagctctgcattggaaggcgagtgtggttttctagctgcgaatctgtatgcaaagagtgtttttg |
1483706 |
T |
|
| Q |
635 |
gtgaagatgctttggcaaatttgagcattgaaaagcaagcagatggtaaattgagtggatacatcacagtaagaagtaaaactgagggaattgctctgag |
734 |
Q |
| |
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| ||||||||| | | ||| |||||||||| |||||| | |||||||||||||| || || |||| | ||||||||||||| |||||||||||||||| |
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| T |
1483707 |
gggaagatgctcttgtgaatgtgagcattgagaagcaatccgatggtaaattgagcggttatatcagaataagaagtaaaacccagggaattgctctgag |
1483806 |
T |
|
| Q |
735 |
tcttg |
739 |
Q |
| |
|
||||| |
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|
| T |
1483807 |
tcttg |
1483811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 20743959 - 20743878
Alignment:
| Q |
304 |
attctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatga |
385 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
20743959 |
attctgggccacattatcaagtctacaaatatgaagtgcctgaccccaccgtgagttcctttaacttgcataaactttatga |
20743878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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