View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14878_high_15 (Length: 256)

Name: NF14878_high_15
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14878_high_15
NF14878_high_15
[»] chr7 (1 HSPs)
chr7 (19-256)||(3086545-3086782)
[»] chr6 (32 HSPs)
chr6 (21-256)||(4579559-4579794)
chr6 (16-256)||(4461245-4461485)
chr6 (21-256)||(4585763-4585998)
chr6 (29-256)||(4256381-4256609)
chr6 (19-255)||(4571097-4571333)
chr6 (19-256)||(4626076-4626313)
chr6 (21-253)||(4469930-4470162)
chr6 (28-256)||(4557259-4557487)
chr6 (21-253)||(4613491-4613723)
chr6 (19-253)||(4622267-4622501)
chr6 (21-253)||(4592358-4592590)
chr6 (21-240)||(4266952-4267171)
chr6 (21-253)||(4514894-4515126)
chr6 (30-253)||(4601925-4602148)
chr6 (35-256)||(4259924-4260145)
chr6 (19-256)||(4516446-4516683)
chr6 (29-246)||(4563846-4564063)
chr6 (21-235)||(4505984-4506198)
chr6 (29-253)||(4574443-4574667)
chr6 (21-253)||(4490128-4490360)
chr6 (21-240)||(4457721-4457940)
chr6 (19-254)||(4598296-4598531)
chr6 (29-253)||(4560641-4560865)
chr6 (23-256)||(4568185-4568418)
chr6 (30-240)||(4617158-4617368)
chr6 (21-253)||(4480820-4481052)
chr6 (21-256)||(3171868-3172103)
chr6 (76-241)||(4493137-4493302)
chr6 (21-103)||(4299669-4299751)
chr6 (176-253)||(4299594-4299671)
chr6 (142-240)||(4504183-4504281)
chr6 (177-252)||(4391901-4391976)
[»] chr5 (2 HSPs)
chr5 (21-238)||(24103126-24103343)
chr5 (21-253)||(27999872-28000104)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-253)||(3492-3724)
[»] scaffold0477 (1 HSPs)
scaffold0477 (19-253)||(4459-4693)
[»] chr3 (1 HSPs)
chr3 (30-253)||(1281250-1281473)
[»] chr8 (5 HSPs)
chr8 (21-256)||(16686037-16686272)
chr8 (21-253)||(1674353-1674585)
chr8 (21-240)||(20863629-20863848)
chr8 (180-230)||(1965197-1965247)
chr8 (183-229)||(1969140-1969186)
[»] scaffold0475 (1 HSPs)
scaffold0475 (48-252)||(3459-3662)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 3086545 - 3086782
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3086545 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 3086644  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  3086645 acagtttattggttgatctccataaaatggccaacacaacattggcactccagcaagtacgctttcaaccgttgagttccatccacaatgagtcaagaat 3086744  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttgcgg 256  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  3086745 ccaccaattgaagggtgattcaatacttgctcttgcgg 3086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 4579559 - 4579794
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| | |||||| |    
T  4579559 tctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaattttccatgtattgcataaatatctgc 4579658  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    || ||| ||| |||||| |  |||| ||||||||||||||||| |||||||||  ||||||||||  | ||||||||||||| |||||| ||||||||||    
T  4579659 agcttactgggtgatcagcgaaaaatggccaacacaacattggaactccagcagatatgctttcagtgattgagttccatccgcaatgagtcaagaatcc 4579758  T
Q  221 accaattgaagggtggttcagtacttgctcttgcgg 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  4579759 accaattgaagggtggttcagtacttgctcttgcgg 4579794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 4461245 - 4461485
Alignment:
Q  16 caatatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatata 115  Q
    |||| ||||| ||||||||||| |||| || |||||| ||||| || ||||||||||   |||||||||||| ||||||||||||| | ||||| ||| |    
T  4461245 caatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccatttgttgcaaataaa 4461344  T
Q  116 tctacagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaag 215  Q
    ||||||||||  ||| ||||||||| | || |||||||||||||| ||||||||||||  ||||||||||  |||||| ||||||||||||||| |||||    
T  4461345 tctacagtttgctggctgatcaccaaagaatggccaacacaacatcggcactccagcacatatgctttcagtggttgaattccatccacaatgagtcaag 4461444  T
Q  216 aatccaccaattgaagggtggttcagtacttgctcttgcgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4461445 aatccaccaattgaagggtggttcagtacttgctcttgcgg 4461485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 4585763 - 4585998
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||||| || |||||| |||||||||||||||||||| || || | ||| || ||||||||||||  |||||| |||  |||||    
T  4585763 tctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccattcattgcaaataattctac 4585862  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| |||||| ||   || |||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||| ||| ||||||||||    
T  4585863 agtttgttggctgatcagcaatgaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccacagtgagtcaagaatcc 4585962  T
Q  221 accaattgaagggtggttcagtacttgctcttgcgg 256  Q
    |||||||||||||||||||| |||||||||||||||    
T  4585963 accaattgaagggtggttcaatacttgctcttgcgg 4585998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 4256609 - 4256381
Alignment:
Q  29 catcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttatt 128  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    | || ||| ||||||||||| ||    
T  4256609 catcaattcattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatctcccattcgctacaaataaatctacagtttgtt 4256510  T
Q  129 ggt-tgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaatt 227  Q
    ||| |||||| || |||| ||||||||||||||||| ||||| |||   |||||||||| ||||||||||||||| |||||| ||||||||||||||| |    
T  4256509 ggtctgatcagcaaaaaatggccaacacaacattggaactccggcacaaatgctttcaatggttgagttccatcctcaatgagtcaagaatccaccaact 4256410  T
Q  228 gaagggtggttcagtacttgctcttgcgg 256  Q
    |||| ||||||||||||||||||||||||    
T  4256409 gaagagtggttcagtacttgctcttgcgg 4256381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 4571097 - 4571333
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    |||||||||||||||||||||||| ||  ||||| ||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4571097 tatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccatgtattgcagatatatct 4571196  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
    |||||||  ||| |||||| || |||| ||| ||||||||||||| ||||||| |  |||||||||    ||||||||||||||||| ||| |||||||     
T  4571197 acagtttgctggctgatcagcaaaaaatggctaacacaacattggaactccagtagatatgctttcggtcgttgagttccatccacagtgagtcaagaaa 4571296  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttgcg 255  Q
    |||||||||||||| ||||||| ||||| ||||||||    
T  4571297 ccaccaattgaaggatggttcaatactttctcttgcg 4571333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 4626076 - 4626313
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    |||||||  |||||||| |||||||||| ||||| ||| |||| ||||||||||||| ||||||||| |||||||||||||||  |||||| ||||||||    
T  4626076 tatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattcattgcaaatatatct 4626175  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
    ||| ||| |||| |||||| || ||   |||||||||| |||||| ||||||||   ||||||||||| |||||||||||||||||||||| | ||||||    
T  4626176 acaatttgttggctgatcagcaaaatttggccaacacagcattggaactccagcgcatatgctttcaatggttgagttccatccacaatgagttaagaat 4626275  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttgcgg 256  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  4626276 ccaccaattgaaggatggttcagtactttctcttgcgg 4626313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 4469930 - 4470162
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||| ||||||||||||||||  |||||||| ||||| |||||||||||||   |||||||||||| |||||||||||||  |||||| ||| ||||||    
T  4469930 tctccaaccatcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctcccattcattgcaaataaatctac 4470029  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    | |||  | | ||||||||| | || ||||||||||||||||||||||||||   ||||||||||  ||||||||||||||| |||||| ||||||||||    
T  4470030 aatttgctagctgatcaccaaagaatggccaacacaacattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatcc 4470129  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
    ||| |||||||||||||||||||||||||||||    
T  4470130 accgattgaagggtggttcagtacttgctcttg 4470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 256
Target Start/End: Original strand, 4557259 - 4557487
Alignment:
Q  28 ccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttat 127  Q
    ||||||||||||||| ||  ||||| ||||| |||||||||||||| || || ||||| || |||||||||||| ||||||| |||||||| ||||||      
T  4557259 ccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatctcccatgtattgcaaatatatctgcagtttgc 4557358  T
Q  128 tggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaatt 227  Q
    ||| |||||| || |||| ||||||||||||||||| |||||||||  ||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  4557359 tggctgatcagcaaaaaatggccaacacaacattggaactccagcagatatgctttcagtggttgagttccatccacaatgagtcaagaatccaccaatt 4557458  T
Q  228 gaagggtggttcagtacttgctcttgcgg 256  Q
    ||||| ||||| | |||||||||||||||    
T  4557459 gaaggatggtttaatacttgctcttgcgg 4557487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4613723 - 4613491
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| || || ||||| || ||||| ||||||  |||||| |||||||| |    
T  4613723 tctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccatcccaatttcccattcattgcatatatatctgc 4613624  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    |||||  ||| |||||  |  |||| |||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||||| ||||||||||    
T  4613623 agtttgctggctgatccgcgaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatcc 4613524  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
     ||||||||||||||||| | ||||||||||||    
T  4613523 gccaattgaagggtggtttaatacttgctcttg 4613491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 4622267 - 4622501
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    ||||||||  |||||||||||||||||| |||   ||||||||||| ||||||||||||| |||||| |||||||||||||||  |||||||||||||||    
T  4622267 tatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattgatttcgattccaatctcccatgaattgcagatatatct 4622366  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
    ||||||| |||| |||||| |  |||| |||||||||| |||||  |||||||||  |||||||||   |||||| ||||||||||||||| ||||||||    
T  4622367 acagtttgttggctgatcagcgaaaaatggccaacacagcattgaaactccagcacatatgctttcggtggttgaattccatccacaatgagtcaagaat 4622466  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttg 253  Q
    |||||||||| ||||||||| ||||||| ||||||    
T  4622467 ccaccaattgcagggtggttaagtacttcctcttg 4622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 4592358 - 4592590
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| || ||||||||||||  |||| | |||  |||||    
T  4592358 tctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccattcattgtaaataagtctac 4592457  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| ||||||| | | || ||||||||||||||||| | |||||||  ||| ||||||  |||||||||||||||||||||| ||||||||||    
T  4592458 agtttgttggctgatcactaaagaatggccaacacaacattggaattccagcacatatactttcagtggttgagttccatccacaatgagtcaagaatcc 4592557  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
    |||||||||||||||||| | ||||||||||||    
T  4592558 accaattgaagggtggtttaatacttgctcttg 4592590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 4267171 - 4266952
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||  | ||||||||| || |||||||||||||| |||| |||||| | |||||||||||||  || ||| ||| ||||||    
T  4267171 tctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctac 4267072  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| ||||||||| | || |||||||||||||||||||||||||||  ||||||||||  |||||| |||||||| |||||| ||||||||||    
T  4267071 agtttgttggctgatcaccaaagaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatcc 4266972  T
Q  221 accaattgaagggtggttca 240  Q
    |||||| |||||||||||||    
T  4266971 accaatcgaagggtggttca 4266952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4515126 - 4514894
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||  ||||| || ||||||||||||||||||||  |||||||||| || ||||||||||||  |||||| ||| ||||||    
T  4515126 tctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatctcccattcattgcaaataaatctac 4515027  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||||||||||||| | ||  ||||||| | |||||||||||||||   |||||| |||  ||||||||||||||| |||||| ||||||||||    
T  4515026 agtttgttggttgatcaccaaagaattgccaacaaagcattggcactccagcgcatatgctctcagtggttgagttccatccgcaatgagtcaagaatcc 4514927  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
     |||||||||||||||||||  |||| ||||||    
T  4514926 gccaattgaagggtggttcaaaactttctcttg 4514894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 4601925 - 4602148
Alignment:
Q  30 atcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttattg 129  Q
    |||| |||||||||||||||| | | |||||||||||||||||| ||||||||||| || ||||||||||||  ||| || ||| ||||||||||| |||    
T  4601925 atcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccattcattacaaataaatctacagtttgttg 4602024  T
Q  130 gttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattga 229  Q
    | |||||  || ||||||||||||||||||| ||||||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| || || ||    
T  4602025 gctgatcggcaaaaaaaggccaacacaacatcggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatccgccgatcga 4602124  T
Q  230 agggtggttcagtacttgctcttg 253  Q
    |||||||||||  |||| ||||||    
T  4602125 agggtggttcaacactttctcttg 4602148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 4260145 - 4259924
Alignment:
Q  35 ttcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttattggttga 134  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||  |||||||||||||||||||||   || || ||| ||||||||||| |||| |||    
T  4260145 ttcattgatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga 4260046  T
Q  135 tcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggt 234  Q
    ||| || |||| ||||||||||||||||| ||| | |||   |||||||||| ||||||||||||||| |||||| | ||||||||||||| ||||| ||    
T  4260045 tcagcaaaaaatggccaacacaacattggaacttcggcacaaatgctttcaatggttgagttccatccgcaatgagttaagaatccaccaactgaagagt 4259946  T
Q  235 ggttcagtacttgctcttgcgg 256  Q
    ||||||||||||||||||||||    
T  4259945 ggttcagtacttgctcttgcgg 4259924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 4516446 - 4516683
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||   |||||||||||||  |||||| ||||||||    
T  4516446 tatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattcattgcaaatatatct 4516545  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
     || ||| |||| || ||| || |||||||||||||||||||||| ||||| |||   |||||||| |  || |||||||||||||||||| ||||||||    
T  4516546 gcaatttgttggctgctcagcaaaaaaaggccaacacaacattggtactccggcacagatgctttccattgtggagttccatccacaatgagtcaagaat 4516645  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttgcgg 256  Q
    || |||| |||||| |||||||  |||| |||||||||    
T  4516646 cctccaactgaaggatggttcaacactttctcttgcgg 4516683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 4563846 - 4564063
Alignment:
Q  29 catcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttatt 128  Q
    ||||||||||||||  || ||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||||  |||| | |||  |||||||||| ||    
T  4563846 catcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattcattgtaaataagtctacagtttgtt 4563945  T
Q  129 ggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattg 228  Q
    || ||||||||| | || ||||||||||||||||| |||||||||  ||||||||||  ||||||||||||||| |||||| |||||||||| |||||||    
T  4563946 ggctgatcaccaaagaatggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccgccaattg 4564045  T
Q  229 aagggtggttcagtactt 246  Q
    |||||||||||| |||||    
T  4564046 aagggtggttcaatactt 4564063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 4505984 - 4506198
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||| ||||| | ||||| || ||||||||| || |  ||||| |||||||||||||| ||||| |||||||||||| ||  |||||| ||| ||||||    
T  4505984 tctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatctccaattcattgcaaataaatctac 4506083  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||||||||||||| | || |||||||||| |||||||||||||||   ||||||||||  ||||||||||||||| |||||| ||||||||||    
T  4506084 agtttgttggttgatcaccaaagaacggccaacacagcattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatcc 4506183  T
Q  221 accaattgaagggtg 235  Q
    |||||||||||||||    
T  4506184 accaattgaagggtg 4506198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 4574443 - 4574667
Alignment:
Q  29 catcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttatt 128  Q
    |||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||  ||||||||||||||  |||||| |||||||| ||||||  |    
T  4574443 catcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgcaaatatatctgcagtttgct 4574542  T
Q  129 ggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattg 228  Q
    || |||||   | |||| |||||||| |||||||| |||||||||  ||||||||||  ||||||||||||||| |||||| ||||||||||||| | ||    
T  4574543 ggctgatccgaaaaaaatggccaacataacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactg 4574642  T
Q  229 aagggtggttcagtacttgctcttg 253  Q
    || ||||||||| ||||| ||||||    
T  4574643 aaaggtggttcaatactttctcttg 4574667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4490360 - 4490128
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||  || ||||||||||||   | ||| |||  |||||    
T  4490360 tctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccattcttcgcaaataattctac 4490261  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
     | | | |||||||||| || |||| |||||||||||||||||||||||||||  ||| || || | | |||||||||||||||||||| ||||||||||    
T  4490260 tgctaagtggttgatcagcaaaaaatggccaacacaacattggcactccagcacatatactctccatgattgagttccatccacaatgagtcaagaatcc 4490161  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
    ||||||||||||||| |||| ||| | ||||||    
T  4490160 accaattgaagggtgattcaataccttctcttg 4490128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 4457721 - 4457940
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||  | |||||| ||||| |||||||||||||| ||||||||||| || |||||||| |||  |||||| ||| ||||||    
T  4457721 tctcccaccatcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataaatctac 4457820  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    |  || |||| | ||||||| | || ||||||| || |||||||||||||||   ||||||||||  ||||||||| |||||||||||| ||||||||||    
T  4457821 aacttgttggcttatcaccaaagaatggccaacgcagcattggcactccagcgcatatgctttcagtggttgagtttcatccacaatgagtcaagaatcc 4457920  T
Q  221 accaattgaagggtggttca 240  Q
     || ||||||||||||||||    
T  4457921 tccgattgaagggtggttca 4457940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 4598296 - 4598531
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    ||||||||  ||||||||| |||| ||||||||| ||||||||||||||||||||||| || ||||  |||||||||||||||  |||||| ||||||||    
T  4598296 tatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccattcattgcaaatatatct 4598395  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
     |||||   | | |||||  |  |||| || |||||||||||||||||||| |||  ||| ||||||  ||||||||||||||| |||||| | ||||||    
T  4598396 gcagttggcttgctgatccgcgaaaaagggacaacacaacattggcactccggcacatatactttcagtggttgagttccatccgcaatgagttaagaat 4598495  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttgc 254  Q
    |||||||||||||| ||||| | |||||||||||||    
T  4598496 ccaccaattgaaggatggtttaatacttgctcttgc 4598531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 4560641 - 4560865
Alignment:
Q  29 catcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttatt 128  Q
    |||||||||||||| ||| ||||| || ||||| ||||| ||||| ||||| |||||  ||||||||| ||||  |||||| |||||||| ||||||  |    
T  4560641 catcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccattcattgcaaatatatcttcagtttgct 4560740  T
Q  129 ggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattg 228  Q
    || |||||  || |||| ||||||||||||||||| |||||||||  ||||||||||  ||||||||||||||| |||||| ||||||||||||| | ||    
T  4560741 ggctgatctgcaaaaaatggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactg 4560840  T
Q  229 aagggtggttcagtacttgctcttg 253  Q
    | |||||||||| ||||| ||||||    
T  4560841 atgggtggttcaatactttctcttg 4560865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 4568185 - 4568418
Alignment:
Q  23 tcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacag 122  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||| |  |||| || |||||||| |||    
T  4568185 tcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattacaaatatatctgcag 4568284  T
Q  123 tttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccac 222  Q
    | | |||| || |||  | ||||||||||||| |||||||| ||||  |||   |||||||| |  || |||||||||||||||||| |||||||||  |    
T  4568285 tatgttggctgctcagaaaaaaaaggccaacataacattggtactctggcacaaatgctttccaatgtggagttccatccacaatgagtcaagaatcgtc 4568384  T
Q  223 caattgaagggtggttcagtacttgctcttgcgg 256  Q
    ||| ||||||||||||||  ||||||||||||||    
T  4568385 caactgaagggtggttcaacacttgctcttgcgg 4568418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 4617158 - 4617368
Alignment:
Q  30 atcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttattg 129  Q
    |||| |||||||||||||||  | | |||||||||||||||||| ||||||||||| || ||||||||||||  ||| || ||| ||||||||| | |||    
T  4617158 atcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatctcccattcattacaaataaatctacagtctgttg 4617257  T
Q  130 gttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattga 229  Q
    | || ||  || |||| ||||||||||||||||||||||||||   ||| ||||||  |||||| |||||||| |||||| |||||||||| || |||||    
T  4617258 gctggtcggcaaaaaatggccaacacaacattggcactccagcgcatatactttcagtggttgaattccatccgcaatgagtcaagaatcctccgattga 4617357  T
Q  230 agggtggttca 240  Q
    |||||||||||    
T  4617358 agggtggttca 4617368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 4480820 - 4481052
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||| |||||||||||| | | |||| || || |||||||||||||| ||||||||||| | |||||||||||||  |||||| |||  |||||    
T  4480820 tctcccaccaacaattcattgattaacctctccacatcttctctcttcacattggtatcgatttcgagtccaatctcccattcattgcaaataattctac 4480919  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
     |||   ||| |||||  || | || |||||||||||||||||||||||||||  ||  ||||||  ||||||||||||||| |||||| ||||||||||    
T  4480920 ggttaggtggctgatcggcaaagaatggccaacacaacattggcactccagcacatacactttcagtggttgagttccatccgcaatgagtcaagaatcc 4481019  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
     || ||||||||||||||||  |||| ||||||    
T  4481020 gccgattgaagggtggttcaaaactttctcttg 4481052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 3171868 - 3172103
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||||| ||||| || ||||||| ||||   | ||| |||  |||||    
T  3171868 tctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatcttccattcttggcaaataattctac 3171967  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
     |||   |||||||||| || |||| |||| |||||||||||||| |||||||  ||  |||||   ||||||||||||||| || ||| ||||||||||    
T  3171968 tgttaggtggttgatcagcaaaaaatggcctacacaacattggcattccagcacatacactttccgtggttgagttccatccgcagtgagtcaagaatcc 3172067  T
Q  221 accaattgaagggtggttcagtacttgctcttgcgg 256  Q
     ||||||||||| |||||||  |||| |||||||||    
T  3172068 gccaattgaaggatggttcaacactttctcttgcgg 3172103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 4493137 - 4493302
Alignment:
Q  76 tatcgatttcaattccaatctcccatatattgcagatatatctacagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaag 175  Q
    |||||||||| | |||||||||| ||  |||||| ||  ||||||||||| |||| ||||||| | | |||||||||||||||||||||||||| |||      
T  4493137 tatcgatttctactccaatctccaattcattgcaaatcaatctacagtttgttggctgatcactaaagaaaggccaacacaacattggcactccggcaca 4493236  T
Q  176 tatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggtggttcag 241  Q
    |||| |||     ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  4493237 tatgtttttggtagttgagttccatccacaatgagtcaagaatccaccaatcgaatggtggttcag 4493302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 4299751 - 4299669
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatat 103  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  4299751 tctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatctcccatat 4299669  T

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Target: chr6; HSP #30
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 4299671 - 4299594
Alignment:
Q  176 tatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggtggttcagtacttgctcttg 253  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  4299671 tatgctttcaatggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttcagtacttgttcttg 4299594  T

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Target: chr6; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 4504281 - 4504183
Alignment:
Q  142 aaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggtggttca 240  Q
    |||| |||||||||||||||||||||||||||   |  ||||||  |||||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  4504281 aaaatggccaacacaacattggcactccagcacaaacactttcagtggttgagttccatccacaatgagtcaagaatcctccgattgaagggtggttca 4504183  T

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Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 4391976 - 4391901
Alignment:
Q  177 atgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggtggttcagtacttgctctt 252  Q
    |||||||||| || |||||| |||||||||||  | |||||||||| |||| |||||||||||| |||||||||||    
T  4391976 atgctttcaatgggtgagtttcatccacaatgcgttaagaatccacaaattcaagggtggttcaatacttgctctt 4391901  T

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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 24103126 - 24103343
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||  | ||||||||| || |||||||||||||| ||||||||||| | |||||||||||||  || ||| ||| ||||||    
T  24103126 tctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtatcgatttcgagtccaatctcccattcatagcaaataaatctac 24103225  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||||||||||||| | || |||||||||||||||||||||||||||  ||||||||||  ||||||||||||||| |||||| ||||||||||    
T  24103226 agtttgttggttgatcaccaaagaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatcc 24103325  T
Q  221 accaattgaagggtggtt 238  Q
    |||||| |||||||||||    
T  24103326 accaatcgaagggtggtt 24103343  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 28000104 - 27999872
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||| |||||||| |  |||||| ||||||||||  |||| ||||| || ||||||| ||||  ||| || ||| ||||||    
T  28000104 tctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcattacaaataaatctac 28000005  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| |||||| || |||| | ||||||||||||||||||||||||   |||||||||   ||||||||||||||| || ||| ||||||| ||    
T  28000004 agtttgttggctgatcagcaaaaaatgaccaacacaacattggcactccagcgcatatgctttcggtggttgagttccatccgcagtgagtcaagaaccc 27999905  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
     |  ||||||||||||||||  |||| ||||||    
T  27999904 gctgattgaagggtggttcaaaactttctcttg 27999872  T

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Target: scaffold0288 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 3724 - 3492
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||| ||||||||||||  |||||||| ||||| |||||||||||||   |||||||||||| |||||||||||||   ||||| ||| ||||||    
T  3724 tctcccaccgtcaattcattgactagcttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccattcgttgcaaataaatctac 3625  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| ||||||||| | || |||||||| | |||||| ||||||||   ||||||||||  |||||| ||||||||||||||| ||||||||||    
T  3624 agtttgttggctgatcaccaaagaatggccaacaaagcattggtactccagcgcatatgctttcagtggttgaattccatccacaatgagtcaagaatcc 3525  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
    |||||||||||||||| ||||||||||||||||    
T  3524 accaattgaagggtggatcagtacttgctcttg 3492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 4693 - 4459
Alignment:
Q  19 tatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatct 118  Q
    ||||||||  |||||||||||||||||  |||   |||| ||||||||||||||||||||| ||||| || ||| |||||||||||| | ||||||| |     
T  4693 tatctcccgacatcaattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtctcccatatatgggagatataccg 4594  T
Q  119 acagtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaat 218  Q
    | ||||| |||| |||||  |  |||| |||||||||||||||||||||||  ||  ||||||||||| ||||||||||||||| |||||| ||||||||    
T  4593 atagtttgttggctgatcggcgaaaaatggccaacacaacattggcactcctacacatatgctttcaatggttgagttccatccgcaatgagtcaagaat 4494  T
Q  219 ccaccaattgaagggtggttcagtacttgctcttg 253  Q
    |||||||||||||||||||||||||||||||||||    
T  4493 ccaccaattgaagggtggttcagtacttgctcttg 4459  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 1281250 - 1281473
Alignment:
Q  30 atcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttattg 129  Q
    |||||||||||||||| |||  | |||||||||||||||||||| ||||||||||| || ||||||| ||||  ||| || ||| ||||||||| | |||    
T  1281250 atcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 1281349  T
Q  130 gttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattga 229  Q
    | |||||| || |||| |||||||||||||||||||||||||||  ||||||||||  ||||||||||||||| |||||| ||||||||||||| |||||    
T  1281350 gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattga 1281449  T
Q  230 agggtggttcagtacttgctcttg 253  Q
    |||||||||||  |||| ||||||    
T  1281450 agggtggttcaacactttctcttg 1281473  T

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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 16686272 - 16686037
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||||| ||  ||||| ||||| |||||||||||||| || || ||||| || ||||||||||||  |||||| |||||||| |    
T  16686272 tctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccattcattgcaaatatatctgc 16686173  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    | |||  ||| |||||| || |||| ||||||||||||||||| |||||||||  ||| ||||||  |||||||||||||||||||||| | ||||||||    
T  16686172 attttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcatatatactttcagtggttgagttccatccacaatgagttaagaatcc 16686073  T
Q  221 accaattgaagggtggttcagtacttgctcttgcgg 256  Q
    ||| |||||||| ||||| | |||||||||||||||    
T  16686072 accgattgaaggatggtttaatacttgctcttgcgg 16686037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 1674353 - 1674585
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    ||||||||||||||||||||||| |||||||| |   |||||||||||||||| ||||| ||||| || ||||||| ||||  ||| || ||| ||||||    
T  1674353 tctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaatcttccattcattacaaataaatctac 1674452  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| |||| |||||| || |||| ||||||||||||||||||||||||||   ||||||||||  ||||||||||||||| || ||  ||||||||||    
T  1674453 agtttgttggctgatcagcaaaaaatggccaacacaacattggcactccagcgcatatgctttcagtggttgagttccatccgcagtgtgtcaagaatcc 1674552  T
Q  221 accaattgaagggtggttcagtacttgctcttg 253  Q
     || ||||||||||||||||  |||| ||||||    
T  1674553 gccgattgaagggtggttcaacactttctcttg 1674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 20863848 - 20863629
Alignment:
Q  21 tctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctac 120  Q
    |||||||||||||||||||| | |||| |||| |||||||||||||| ||||| || || ||||| || |||||||||||| | ||||| || ||||| |    
T  20863848 tctcccaccatcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgc 20863749  T
Q  121 agtttattggttgatcaccataaaaaggccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatcc 220  Q
    ||||| | || |||||| || |||| ||||| |||||||||||||||||||||  |||||| |||| |||||||||||||||||||||| | |  |||||    
T  20863748 agtttgtcggctgatcagcaaaaaatggccagcacaacattggcactccagcacatatgctctcaatggttgagttccatccacaatgagttagaaatcc 20863649  T
Q  221 accaattgaagggtggttca 240  Q
    |||||||||||| |||||||    
T  20863648 accaattgaaggatggttca 20863629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 1965247 - 1965197
Alignment:
Q  180 ctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaa 230  Q
    ||||||| |||||||||||| ||||| ||||||||||| || |||||||||    
T  1965247 ctttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaa 1965197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 1969186 - 1969140
Alignment:
Q  183 tcaacggttgagttccatccacaatgactcaagaatccaccaattga 229  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  1969186 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 1969140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 3662 - 3459
Alignment:
Q  48 ttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatatattgcagatatatctacagtttattggttgatcaccataaaaag 147  Q
    ||||| |||||||||||||||||||| | ||| |||||| ||||||||||||||  ||| || ||  ||||||||||| |||  || ||     |||| |    
T  3662 ttctccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaatgcatctacagtttgttgagtgttcggggaaaaatg 3563  T
Q  148 gccaacacaacattggcactccagcaagtatgctttcaacggttgagttccatccacaatgactcaagaatccaccaattgaagggtggttcagtacttg 247  Q
    |||||| || |||||| ||||||| |   |||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||||||||  |||||    
T  3562 gccaacgcagcattggaactccagaacaaatgctttcaatggttgagttccatccacaatgagttaagaatccaccaact-aagggtggttcaacacttg 3464  T
Q  248 ctctt 252  Q
    |||||    
T  3463 ctctt 3459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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