View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_high_16 (Length: 252)
Name: NF14878_high_16
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 32505471 - 32505228
Alignment:
| Q |
13 |
cataggtaaggggaatttgttgtttaattatgttcggatgaacactaataaatgaaaacatg----tcatggtcccatgaccccatgaatgaaaaacttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32505471 |
cataggtaaggggaatttgttgtttaattatgttgggatgaacactaataaatgaaaacatgcatgtcatggtcccatgaccccatgaatgaaaaacttt |
32505372 |
T |
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| Q |
109 |
gttggcaattgggcagtgaaggttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcgtaagcagaactcatacgtaccac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32505371 |
gttggcaattgggcagtgaaggttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcctaagcagaactcatacgtaccac |
32505272 |
T |
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| Q |
209 |
ccttcaaatgtcatctgccccacccaattgtcaaaccattcaca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505271 |
ccttcaaatgtcatctgccccacccaattgtcaaaccattcaca |
32505228 |
T |
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