View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14878_high_2 (Length: 510)
Name: NF14878_high_2
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 9147511 - 9147001
Alignment:
| Q |
1 |
gtagtagatgcatgatcatgcatggatggtttttgttggacatattaagtggaaacttctgtgggcatcttcaaggataggttttcgaattcagagttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9147511 |
gtagtagatgcatgatcatgcatggatggtttttgttggacatattaagtggaaacttctgagggcatcttcaaggataggttttcgaattcagagttaa |
9147412 |
T |
|
| Q |
101 |
ggacattcctgaatgcagtttgtgcatgagatccagagagaaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9147411 |
gggcattcctgaatgcagtttgtgcatgagatccagagagaaaacaccagccatatttaatatctgtgtttggattacgagcgcaaaagcttccacttcc |
9147312 |
T |
|
| Q |
201 |
tttcttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcatca-----------------taatctctgcaaaatccattc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9147311 |
tttcttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcatcatatcatgttcagatatgtaatctctgcaaaatccattc |
9147212 |
T |
|
| Q |
284 |
agaaatgttgcggggtggcagtaacaacccggttcacgctctgacccactgtaacatacatcatccgattgccatgcccaacaaagatgactttcacaag |
383 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9147211 |
agaaatgtttcggggtggcagtaacaacccggttcacgttctgacccactgtaacatactttatccggttgccatgcccaacaaagatgactttcacaag |
9147112 |
T |
|
| Q |
384 |
cttctaccttcttcataggaaacacagcaactgtatggtgatggcatattgttaattcaaacatatatagttaattcgaacataaatagataaatggtga |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9147111 |
cttctaccttcttcataggaaacacagcaactgtatggtgatggcatattgttaattcaaacatatatagttaattcgaacataaatagataaatggtga |
9147012 |
T |
|
| Q |
484 |
ggcatagtttt |
494 |
Q |
| |
|
| ||||||||| |
|
|
| T |
9147011 |
gacatagtttt |
9147001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 6803025 - 6803101
Alignment:
| Q |
172 |
ggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctc |
248 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||| |||| || ||||||||||| ||||||||||||| |||||| |
|
|
| T |
6803025 |
ggataacgagcgcaaaaactcccacttcctttcttcgtgcaatcagcatgagactgacataagttaggatgttcctc |
6803101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 7947172 - 7947075
Alignment:
| Q |
141 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttag |
238 |
Q |
| |
|
||||||||| |||||||| ||||| | || |||| |||||| |||||||| ||||||||||||||| |||| || |||||||| || |||||||||| |
|
|
| T |
7947172 |
aaaacaccatccatatttgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttag |
7947075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 7941621 - 7941524
Alignment:
| Q |
141 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttag |
238 |
Q |
| |
|
||||||||| ||||||| ||||| | || |||| |||||| |||||||| ||||||||||||||| |||| || |||||||| || |||||||||| |
|
|
| T |
7941621 |
aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttag |
7941524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 7950547 - 7950483
Alignment:
| Q |
184 |
caaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctc |
248 |
Q |
| |
|
||||||||||||||| | |||||| |||| || || |||||||| ||||||||||||| |||||| |
|
|
| T |
7950547 |
caaaagcttccactttccttcttcgtgcaatcagcgtgagactgacataagttaggatgttcctc |
7950483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 12110274 - 12110191
Alignment:
| Q |
177 |
acgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcat |
260 |
Q |
| |
|
|||||| |||||| | |||||||| ||||| |||| |||||||||| || ||||||||||||| |||||| ||| ||||||| |
|
|
| T |
12110274 |
acgagcacaaaagttcccacttcccttcttgatgcactcggcatgagtttgacataagttaggatgttcctcgatcatcttcat |
12110191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 12123981 - 12123862
Alignment:
| Q |
141 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttagga |
240 |
Q |
| |
|
||||||||| ||||||| ||||| || || | || ||| || |||||| |||||||||| ||||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
12123981 |
aaaacaccatccatattcgatatcagcattagcataacgggcacaaaagtttccacttcccttcttgaagcattcagcatgagtttggcataagttagga |
12123882 |
T |
|
| Q |
241 |
tcttcctccatcttcttcat |
260 |
Q |
| |
|
| |||||| ||| ||||||| |
|
|
| T |
12123881 |
tgttcctcgatcatcttcat |
12123862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 12128109 - 12128045
Alignment:
| Q |
177 |
acgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggat |
241 |
Q |
| |
|
|||||| |||||| |||||||||| ||||| |||| |||||||||| || ||||||||||||| |
|
|
| T |
12128109 |
acgagcacaaaagtttccacttcccttcttgatgcactcggcatgagtttgacataagttaggat |
12128045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University