View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_high_3 (Length: 445)
Name: NF14878_high_3
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 7631086 - 7630662
Alignment:
| Q |
1 |
tcaaatatagattgtgatctcgacccaatagtcattgatttgctaacgattgttgaccgcaaaaattccgaagtcacaaattagaaggttatgagtaaga |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
7631086 |
tcaaatatagattgtgatatcgacccaatagtcattgatttgctaacgattgttgaccgcaacaattccgaattcaca--ttagaaggttatgagtaaga |
7630989 |
T |
|
| Q |
101 |
ggannnnnnnngtnnnnnnnnnnggtaccttctccattcttgactcttgaagagtatctctaaggctaggagttggagcaaatccacttctacaaacaaa |
200 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7630988 |
ggattttttttgtaaaaaaaaa-ggtaccttctccattcttgactcttgaagagtatctctaaggctaggtgttggagcaaatccacttctacaaacaaa |
7630890 |
T |
|
| Q |
201 |
catcttcttaagaagaaaagatatagatttctttccaattgatttcttgcttttttcagcacaaatgtctttgcatttatcaagtatgacactaagtgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7630889 |
catcttcttaagaagaaaagatatagatttctttccaattgatttcttgcttttttcagcacaaatgtctttgcatttatcaagtatgacactaagtgtc |
7630790 |
T |
|
| Q |
301 |
ttctcaatatcctcatctttgtcaccacctgattcactgcaaagtgcattgctgattctcctatcaacctccaagcttgatggacagttaagaaatctat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7630789 |
ttctcaatatcctcatctttgtcaccacctgattcactgcaaagtgcattgctgattctcctatcaacctccaagcttgatggacagttaagaaatctat |
7630690 |
T |
|
| Q |
401 |
caaggggaagctcagaaatctctttttc |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
7630689 |
caaggggaagctcagaaatctctttttc |
7630662 |
T |
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