View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_high_4 (Length: 404)
Name: NF14878_high_4
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 110 - 388
Target Start/End: Complemental strand, 35365310 - 35365035
Alignment:
| Q |
110 |
ttagttagcatgaccgattaaattagtatttgattcttatgaggatgttgtttaattaacgtacgggtgcagaaattttatgatttgggaggtcgtaatg |
209 |
Q |
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| T |
35365310 |
ttagttagcatgaccgattaaattaatatttgattcttatgaggatgtt---taattaacgtacgggtgcagaaattttatgatttgggaggtcgtaatg |
35365214 |
T |
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| Q |
210 |
ttcttgtaatgggcatgggaccaatgggatgttgtattcctatagagttacctttatggagtaataacggtgattgtgatgttgaactcgtgagtgctgc |
309 |
Q |
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| T |
35365213 |
ttcttgtaatgggcatgggaccaatgggatgttgtattcctatagagttacctttatggagtaataacggtgattgtgatgttgaactcgtgagtgctgc |
35365114 |
T |
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| Q |
310 |
ctctttatatgatcgacaatttgtcgaaatgatcaaagaactcaacacagagattggtgctgatgtcttcattgctatt |
388 |
Q |
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| T |
35365113 |
ctctttatatgatcgacaatttgtcgaaatgatcaaagaactcaacacagagattggtgctgatgtcttcattgctatt |
35365035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 174 - 385
Target Start/End: Complemental strand, 35376790 - 35376582
Alignment:
| Q |
174 |
gggtgcagaaattttatgatttgggaggtcgtaatgttcttgtaatgggcatgggaccaatgggatgttgtattcctatagagttacctttatggagtaa |
273 |
Q |
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| T |
35376790 |
gggtgcagaaactttatgatttgggaggtcgtaaggttcttgtaacgggcacgggaccaatggggtgt-gta--cctgcagagttagctttgagaagtag |
35376694 |
T |
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| Q |
274 |
taacggtgattgtgatgttgaactcgtgagtgctgcctctttatatgatcgacaatttgtcgaaatgatcaaagaactcaacacagagattggtgctgat |
373 |
Q |
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| T |
35376693 |
aaatggtgattgtgatgtggaactcgtgagagctgcctccttatataatccacaacttgtcgaaatgatcaaagaactcaacacagagattggttctgat |
35376594 |
T |
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| Q |
374 |
gtcttcattgct |
385 |
Q |
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| T |
35376593 |
gtcttcattgct |
35376582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 35358111 - 35358004
Alignment:
| Q |
278 |
ggtgattgtgatgttgaactcgtgagtgctgcctctttatatgatcgacaatttgtcgaaatgatcaaagaactcaacacagagattggtgctgatgtct |
377 |
Q |
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| T |
35358111 |
ggtgattgtgatgcggaactcatgagagctgcgtccttatataatccacaacttgttcaaatgatcacacaactcaacagagagattggtgatgatgtct |
35358012 |
T |
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| Q |
378 |
tcattgct |
385 |
Q |
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| T |
35358011 |
tcattgct |
35358004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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