View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14878_low_10 (Length: 343)
Name: NF14878_low_10
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_10 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 818013 - 817679
Alignment:
| Q |
9 |
gacatcatcatcactggtaatgatgaggctggcatccaacaattgaaacaacatttatcccttcactttcaaactaaagatttgggaccactaaaatatt |
108 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||| |
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| T |
818013 |
gacatcatcatcactggtaatgataaggctggcatccaacaattgaaacaacatctatcccttcactttcaaactaaagatttgggtccactgaactatt |
817914 |
T |
|
| Q |
109 |
tcttggggattgaagttgctcggtccaagactggtgcggctattacttagcgaaaatatgctcttgatatacttgaggaaattggcttgcttgatttccg |
208 |
Q |
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||||||||||||||||||||| |||||||||||| | |||||||||| | |||| ||||||||||||||| |||||||||| ||| ||||||| || ||| |
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| T |
817913 |
tcttggggattgaagttgctcagtccaagactggagtggctattactcaacgaagatatgctcttgatattcttgaggaaactggtttgcttgcttgccg |
817814 |
T |
|
| Q |
209 |
acctagtgacactcctctggatcctaacgtcaagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacgcttagtcggcaaactt |
308 |
Q |
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|||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
817813 |
acctagtgacactcctatggatcccaacgttaagttactaccaggtcagcgggagccactgaaagaccctggcagatatcgacgtctagtcggcaaactt |
817714 |
T |
|
| Q |
309 |
tattacctcacagtaaccagaacatacattacatt |
343 |
Q |
| |
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|||||||||||||||| ||| || |||||||||| |
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| T |
817713 |
aattacctcacagtaactagaccagacattacatt |
817679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 3054558 - 3054696
Alignment:
| Q |
54 |
aaacaacatttatcccttcactttcaaactaaagatttgggaccactaaaatatttcttggggattgaagttgctcggtccaagactggtgcggctatta |
153 |
Q |
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||||||||||| || || |||||||| ||| |||||||||| |||| ||||| ||| ||| | ||||||||||| ||| |||| |||| |||||||| |
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| T |
3054558 |
aaacaacatttgtctctacactttcagactcaagatttggggccaccaaaattttt-ttgcaggttgaagttgcttagtctaagataggtgtggctatta |
3054656 |
T |
|
| Q |
154 |
cttagcgaaaatatgctcttgatatacttgaggaaattgg |
193 |
Q |
| |
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|| | | ||||||||||| ||| || |||||||||||||| |
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| T |
3054657 |
ctcatcaaaaatatgctcctgacattcttgaggaaattgg |
3054696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 22161428 - 22161094
Alignment:
| Q |
9 |
gacatcatcatcactggtaatgatgaggctggcatccaacaattgaaacaacatttatcccttcactttcaaactaaagatttgggaccactaaaatatt |
108 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
22161428 |
gacatcatcatctttggtaatgataaggctgacatccaacagttgaaacaacatctatcccttcagtttcaaactaaagatttgggtccactgaaatatt |
22161329 |
T |
|
| Q |
109 |
tcttggggattgaagttgctcggtccaagactggtgcggctattacttagcgaaaatatgctcttgatatacttgaggaaattggcttgcttgatttccg |
208 |
Q |
| |
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|||||||||||||||||| || ||| |||||||| | |||||||||| |||||| ||||||| ||||||| |||||||||| ||| |||||||||| ||| |
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| T |
22161328 |
tcttggggattgaagttgttcagtctaagactggagtggctattactcagcgaagatatgcttttgatattcttgaggaaactggtttgcttgattgccg |
22161229 |
T |
|
| Q |
209 |
acctagtgacactcctctggatcctaacgtcaagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacgcttagtcggcaaactt |
308 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||| |
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| T |
22161228 |
acctagtgacacttctatggatcccaacgtcaagttactaccaggtcagggggagccactgaaagacccaggcagatatcgacgtctagtcggcaaactt |
22161129 |
T |
|
| Q |
309 |
tattacctcacagtaaccagaacatacattacatt |
343 |
Q |
| |
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||| |||||||||||| ||| | |||||||||| |
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| T |
22161128 |
aatttcctcacagtaactagacaagacattacatt |
22161094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 20592982 - 20592679
Alignment:
| Q |
40 |
gcatccaacaattgaaacaacatttatcccttcactttcaaactaaagatttgggaccactaaaatatttcttggggattgaagttgctcggtccaagac |
139 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||| |
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| T |
20592982 |
gcatccaacagttgaaacaacatctatcccttcactttcaaactaaagatttgggtccactgaaatatttcttagggattgaagttgctcagtccaagac |
20592883 |
T |
|
| Q |
140 |
tggtgcggctattacttagcgaaaatatgctcttgatatacttgaggaaattggcttgcttgatttccgacctagtgacactcctctggatcctaacgtc |
239 |
Q |
| |
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||| | |||||||||| |||||| ||||||||||||||| |||||||||| | | |||||||||| |||||||||||||||| || ||||||| |||||| |
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| T |
20592882 |
tggagtggctattactcagcgaagatatgctcttgatattcttgaggaaactagtttgcttgattgccgacctagtgacacttctatggatcccaacgtc |
20592783 |
T |
|
| Q |
240 |
aagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacgcttagtcggcaaactttattacctcacagtaaccagaacatacatta |
339 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||| ||| || |||||| |
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| T |
20592782 |
aagttactaccaggtcagggggagccactgaaagaccctggcagatatcgacgtctagtcagcaaacttaattaccccacagtaactagaccagacatta |
20592683 |
T |
|
| Q |
340 |
catt |
343 |
Q |
| |
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|||| |
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| T |
20592682 |
catt |
20592679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 24182151 - 24181831
Alignment:
| Q |
9 |
gacatcatcatcactggtaatgatgaggctggcatccaacaattgaaacaacatttatcccttcactttcaaactaaagatttgggaccactaaaatatt |
108 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||| || ||||||| | |||| |||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
24182151 |
gacaacatcatcactggtaatgataagactggcatccaacagttaaaacaacgtctatcatttcacttttaaactaaagatttaggaccactaaaatatt |
24182052 |
T |
|
| Q |
109 |
tcttggggattgaagttgctcggtcc-aagactggtgcggctattacttagcgaaaatatgctcttgatatacttgaggaaattggcttgcttgatttcc |
207 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| ||||||| || |||||| |||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
24182051 |
tcttggggattgaagttgctcagtccaaagatatgtgtggctattgctcagcgaagatatgctcttaatatacttgaggaaatttgcttgcttgattgtc |
24181952 |
T |
|
| Q |
208 |
gacctagtgacactcctctggatcctaacgtcaagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacgcttagtcggcaaact |
307 |
Q |
| |
|
||||||||| ||||||| ||||||| || |||||||||||| ||| ||| |||||||||||| |||||| | | | |||||| | ||||||||||||| |
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|
| T |
24181951 |
gacctagtgtcactcctatggatcccaatgtcaagttactatcagatca-ggggagccattggaagaccttagcaaatatcggagtctagtcggcaaact |
24181853 |
T |
|
| Q |
308 |
ttattacctcacagtaaccaga |
329 |
Q |
| |
|
| ||||||||| | |||||||| |
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| T |
24181852 |
taattacctcatactaaccaga |
24181831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 30665813 - 30665967
Alignment:
| Q |
136 |
agactggtgcggctattacttagcgaaaatatgctcttgatata----cttgaggaaattggcttgcttgatttccgacctagtgacactcctctggatc |
231 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||| | ||||| |||| |||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
30665813 |
agactggtgtggctattactcagcgaaaatatgctcttgatagatacacttgaagaaactggcttgcttgattgccgacctagtgacactcctatggatc |
30665912 |
T |
|
| Q |
232 |
ctaacgtcaagttactaccaggtcagggggagccattgaaagaccctgggagata |
286 |
Q |
| |
|
| |||||||||||||| ||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
30665913 |
ccaacgtcaagttactgccaagtcagggggagccactgaaagaccctggcagata |
30665967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 328
Target Start/End: Original strand, 34611077 - 34611235
Alignment:
| Q |
170 |
tcttgatatacttgaggaaattggcttgcttgatttccgacctagtgacactcctctggatcctaacgtcaagttactaccaggtcagggggagccattg |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||| || |||| | |||||| |||||| |||||||| ||| |
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|
| T |
34611077 |
tcttgatatacttgaggaaactggcttgcttgattgttgacccagtgacactcctatggatcccaaggtcaggctactactaggtcaaggggagcctttg |
34611176 |
T |
|
| Q |
270 |
aaagaccctgggagatatcgacgcttagtcggcaaactttattacctcacagtaaccag |
328 |
Q |
| |
|
|| |||||||| ||||||||| |||| || |||||| ||||||||||||| ||||| |
|
|
| T |
34611177 |
aacgaccctggtcaatatcgacgtctagttggaaaacttaattacctcacagtgaccag |
34611235 |
T |
|
Back To:
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 21501116 - 21501050
Alignment:
| Q |
238 |
tcaagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacgcttagtcggcaa |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| || |||||||| || |||||||| |
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|
| T |
21501116 |
tcaagttactaccaggtcagggggaaccactgaaagaccctggcagttatcgacgttttgtcggcaa |
21501050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 9187550 - 9187632
Alignment:
| Q |
210 |
cctagtgacactcctctggatcctaacgtcaagttactaccaggtcagggggagccattgaaagaccctgggagatatcgacg |
292 |
Q |
| |
|
|||| |||||||| | ||||||| || |||||| | || || ||| |||||||||||||||||||||| || ||||||||||| |
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|
| T |
9187550 |
cctattgacactcatatggatccaaatgtcaagcttcttccgggttagggggagccattgaaagacccgggaagatatcgacg |
9187632 |
T |
|
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