View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_11 (Length: 291)
Name: NF14878_low_11
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 37548387 - 37548112
Alignment:
| Q |
16 |
aaaattatcactagattgctaattgcaatgctccattttatccttgttaagatgggttcacacgaagttagcatatttgttgatgtgagttgctaggcaa |
115 |
Q |
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| T |
37548387 |
aaaattatcactagattgctaattgcaatgctccattttatccttgttaagatgggttcacacgaagttagcatatttgttgatgtgagttgctaggcaa |
37548288 |
T |
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| Q |
116 |
taagttatatgtggtgggaaacaaaaagtctacagcgggaaatttatctacattgaaatcttaatcactcatttattcatatactggtgaggatttcgat |
215 |
Q |
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| T |
37548287 |
taagttaaatgtggtgggaaacaaaaagtctacagcgggaaatttatctacattgaaatcttaatcactcatttattcatatactggtgaggatttcgat |
37548188 |
T |
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| Q |
216 |
tgaactccttctggtgataattccacggtcccagtgttgtaaacaataacaaattgaatttttgtatgaaaataat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37548187 |
tgaactccttctggtgataattccacggtcccagtgttgtaaacaataacaaattgaatttttgtatgaaaataat |
37548112 |
T |
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