View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_13 (Length: 289)
Name: NF14878_low_13
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 45243183 - 45243452
Alignment:
| Q |
16 |
atgcagttatgttatttcgacatcaaaatacatacaccataatatatgat--------gtttatccctatctctcttattctttatcttctagaacttac |
107 |
Q |
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| T |
45243183 |
atgcagttatgttatttcgacatcaaaatacatacaccataaaatatgatacagatgtgtttatccctatctctcttattctttatcttctagaacttac |
45243282 |
T |
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| Q |
108 |
agatannnnnnnnnnnnnnnnn----catgcaaaaaccaatggatactgtacctgatatcaaaattttgatgtccagacatcatttctcaatcaaaaaag |
203 |
Q |
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| T |
45243283 |
agatatttttttttaaaaaaaaaaaacatgcaaaaaccaatggataca--acctgatatcaaaattttgatgtccagacatgatttctcaatcaaaaaag |
45243380 |
T |
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| Q |
204 |
tttaggtaccgatatcatgcgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataagt |
275 |
Q |
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| T |
45243381 |
tttaagtaccgatatcatgtgatggtatcattgaaatcaactgatatgcaaacattcagataaacaacaagt |
45243452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 45230114 - 45230207
Alignment:
| Q |
181 |
acatcatttctcaatcaaaaaagtttaggtaccgata-tcatgcgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataa |
273 |
Q |
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| T |
45230114 |
acatcatttctcaatcaaaaaagtttaactcccgataatcatatgatgagatcattgaaatcaactgatacgcaaacattcagataaacaataa |
45230207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
157 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
195 |
Q |
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| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 8576885 - 8576845
Alignment:
| Q |
16 |
atgcagttatgttatttcgacatcaaaatacatacaccata |
56 |
Q |
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| T |
8576885 |
atgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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