View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14878_low_2 (Length: 536)
Name: NF14878_low_2
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 258 - 519
Target Start/End: Original strand, 53699282 - 53699544
Alignment:
| Q |
258 |
tatcaaaaaatcactaccaatatcacctggttatattgaattatttttgtcagcaagaacactgaaatattaaaagaaaaggtacaaagggtatttcaat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53699282 |
tatcaaaaaatcactaccaatatcacctggttatattgaattatttttgtcagcaagaacactgaaatattaaaataaaaggtacaaagggtatttcaat |
53699381 |
T |
|
| Q |
358 |
ctaccaatatcaaagtcgtttaattagaaggttacttcctaagctggcatacaatccagaaagttaacacaccacttagagaaataattacttcaaatgg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699382 |
ctaccaatatcaaagtcgtttaattagaaggtaacttcctaagctggcatacaatccagaaagttaacacaccacttagagaaataattacttcaaatgg |
53699481 |
T |
|
| Q |
458 |
agaactg-aaaaaatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
519 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699482 |
agaactgaaaaaaatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
53699544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 53699063 - 53699232
Alignment:
| Q |
15 |
cacagaccgattttctggggttgtgttagacataaccacaatttctaatagtataaaaattcctttatattttccttttgctt------------tacaa |
102 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53699063 |
cacaaaccgactttatggggttgtgttagacatagccacaatttctaatagtataaaaattcctttatattttccttttgctttaggtcgaaaactacaa |
53699162 |
T |
|
| Q |
103 |
--cttgttgtnnnnnnngattaaattgatctaaaccattatttgtgtgaagtacttttcgtattcttgta |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699163 |
gccttgttgtaaaaaaggattaaattgatctaaaccattatttgtgtgaagtacttttcgtattcttgta |
53699232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 19522362 - 19522406
Alignment:
| Q |
21 |
ccgattttctggggttgtgttagacataaccacaatttctaatag |
65 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
19522362 |
ccgattttgtggggttgtgttagacacaaccacgatttctaatag |
19522406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University