View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_21 (Length: 253)
Name: NF14878_low_21
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 9147709 - 9147489
Alignment:
| Q |
33 |
ccgcaaattaagaggctcaggaccatatgcaaatatgtgcaattctattagtagagtaaatctctttatttgttaacgatacataaagttcttacataac |
132 |
Q |
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| T |
9147709 |
ccgcaaattaagaggcgcaggaccatatgcaaatatatgtagttctattagtagagtaaatctctttatttgttaacgatacataaagttcttacataac |
9147610 |
T |
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| Q |
133 |
aatatcatacttatacccacacacatgcatatataatatattgtttttcaaatccaaaccaaaatggaaaggaagacaaatggagcaattttatttaagt |
232 |
Q |
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| T |
9147609 |
aatatcatacatatacccacacacatgcacatataatatattgtttttcaaatccaaaccaaaatggaaaggaagacaaatggagcaattttatttaagt |
9147510 |
T |
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| Q |
233 |
agtagatgcatgatcatgcat |
253 |
Q |
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| T |
9147509 |
agtagatgcatgatcatgcat |
9147489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 9141576 - 9141359
Alignment:
| Q |
36 |
caaattaagaggctcaggaccatatgcaaatatgtgcaattctattagtagagtaaatctctttatttgttaacgatacataaagttcttacataacaat |
135 |
Q |
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| T |
9141576 |
caaataaagaggcgcaggaccatatgcaaatatgtgcagttctattagtagaggaaatctctttatttattaacaatacataaagttcttacataacaat |
9141477 |
T |
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| Q |
136 |
atcatacttatacccacacacatgcatatataatatattgtttttcaaatccaaaccaaaatggaaaggaagacaaatg--gagcaattttatttaagta |
233 |
Q |
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| T |
9141476 |
atcacacatatacccacacacatgcatatataatatcttgtttttcaattccaaacctagatggaaaggaagacagatggagagcaattttatttaagta |
9141377 |
T |
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| Q |
234 |
gtagatgcatgatcatgc |
251 |
Q |
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| T |
9141376 |
gtagatgcatgatcatgc |
9141359 |
T |
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