View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14878_low_23 (Length: 251)
Name: NF14878_low_23
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31606997 - 31606901
Alignment:
| Q |
1 |
caagcatgtgaattatgttatttggtggaaaattttgtctatcatttgaagttcttggaccaacctgccattcatcaacattaatcagaagtttaat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31606997 |
caagcatgtgaattatgttatttggtggaaaattttgtctatcatttgaagttcttggaccaacctgccattcatcaacattaatcagaagtttaat |
31606901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 31606867 - 31606818
Alignment:
| Q |
192 |
gcaaaattttacttgaatttgtaaagttttgaaataaaccataagtttag |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
31606867 |
gcaaaattttacttgagcttgtaaagttttgaaataaaccataattttag |
31606818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University