View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_24 (Length: 238)
Name: NF14878_low_24
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 32504920 - 32505138
Alignment:
| Q |
17 |
aattgagtccacttagtttatacagatccaatcagtgtacaagaaatgtattggacatgtgcgaaaatccaccaaaatcgggtactatcacattaaagtg |
116 |
Q |
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| T |
32504920 |
aattgagtccacttagtttatacagatccaatcagtgtacaagaaatgtattggacatgtgcgaaaatccactaaaatcgggtactatcacattaaagtg |
32505019 |
T |
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| Q |
117 |
tgatgttgtagggtgggttcaaataatcaaatacaagcagagctcaaaaccatgcataacaatagcacttaattagaaaatcacagaactagcttatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505020 |
tgatgttgtagggtgggttcaaataatcaaataca---agagatcaaaaccatgcataacaatagcacttaattagaaaatcacagaactagcttatcat |
32505116 |
T |
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| Q |
217 |
acagctcatctcattaaattgc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
32505117 |
acagctcatctcattaaattgc |
32505138 |
T |
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