View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14878_low_26 (Length: 237)

Name: NF14878_low_26
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14878_low_26
NF14878_low_26
[»] chr7 (17 HSPs)
chr7 (15-221)||(8609699-8609905)
chr7 (15-219)||(8383058-8383262)
chr7 (17-221)||(8570095-8570299)
chr7 (41-219)||(8537844-8538022)
chr7 (17-214)||(8576110-8576307)
chr7 (49-219)||(8601790-8601960)
chr7 (17-221)||(8545417-8545621)
chr7 (75-221)||(29577852-29577998)
chr7 (41-221)||(8581508-8581688)
chr7 (42-221)||(29582021-29582200)
chr7 (75-177)||(8559170-8559272)
chr7 (97-144)||(8667283-8667330)
chr7 (17-129)||(8590422-8590534)
chr7 (17-120)||(7878014-7878117)
chr7 (74-151)||(8664901-8664978)
chr7 (185-221)||(7877913-7877949)
chr7 (71-147)||(8636597-8636673)
[»] chr8 (1 HSPs)
chr8 (17-219)||(12528288-12528490)
[»] chr5 (1 HSPs)
chr5 (112-150)||(28219797-28219835)
[»] chr4 (1 HSPs)
chr4 (52-150)||(30775071-30775169)
[»] chr1 (1 HSPs)
chr1 (52-144)||(4678814-4678906)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 8609699 - 8609905
Alignment:
Q  15 gaacaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctc 114  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8609699 gaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctc 8609798  T
Q  115 aaacttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgcc 214  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  |||| || || ||||||||||||||||| ||||||    
T  8609799 aaacttcgcacgagtgattgatgaacaaaaatcaataccctcagatatagcatcaatatcaattgtggcctccgtgtcaaatgaaagtgtcctctttgcc 8609898  T
Q  215 ctctcac 221  Q
    |||||||    
T  8609899 ctctcac 8609905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 8383262 - 8383058
Alignment:
Q  15 gaacaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctc 114  Q
    ||||||||||||||||| |  |||| | ||| ||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| || ||||||||    
T  8383262 gaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatattgagttgctc 8383163  T
Q  115 aaacttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgcc 214  Q
    ||| || || ||||| | ||| |||  |||||||||||| ||| | | |||||| || ||||||  ||| ||| ||||||||||||||||||||||||||    
T  8383162 aaatttggcccgagtgactgaagaattaaaatcaataccctcatacagagcatctatgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgcc 8383063  T
Q  215 ctctc 219  Q
    |||||    
T  8383062 ctctc 8383058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8570095 - 8570299
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    ||||||||||||||| | ||||| ||||| |||||||||| ||||||||| | ||| || |||||||||||||||||||||| ||| || | || |||||    
T  8570095 acaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattcatttcctcaa 8570194  T
Q  117 acttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccct 216  Q
    |||| || || || ||||||||||  || ||||| || | | |||||||||| |  |||||  |||| ||||||||| ||||||||||||||||||||||    
T  8570195 acttggcccgggttattgatgaactgaagtcaattcccttatatatagcatctagctcaattgtggcctcagtatcatatgaaagtgtcctttttgccct 8570294  T
Q  217 ctcac 221  Q
    |||||    
T  8570295 ctcac 8570299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 8537844 - 8538022
Alignment:
Q  41 tccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaac 140  Q
    ||||| ||||||||| ||| |||||| | ||| || | ||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||    
T  8537844 tccatcttagcatcattaaaacaactcttaacagttttcatacacttttcaaagaggtccatgttgagttgctcaaacttggcccgagtgattgatgaac 8537943  T
Q  141 aaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccctctc 219  Q
    | ||||||| ||| | | |||||||||| ||||||||  |||| ||||| ||  | ||||| | |||||||||||||||    
T  8537944 agaaatcaacaccctgacatatagcatctatatcaattgtggcttcagtgtcgtaagaaagcgacctttttgccctctc 8538022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 8576110 - 8576307
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    ||||||||||||||| | ||||| ||||| |||||||||| ||||||| | | ||| || | |||||||||||||||||||| ||| || | || |||||    
T  8576110 acaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttcctcaa 8576209  T
Q  117 acttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgcc 214  Q
    |||| || || || ||||| ||||| || |||||||| | | |||||||||| |  |||||  |||||||||| ||| ||||||||||||||||||||    
T  8576210 acttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcatcagtgtcatatgaaagtgtcctttttgcc 8576307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 8601790 - 8601960
Alignment:
Q  49 agcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatca 148  Q
    ||||||| |||||||||||||||| ||||| |||||||| | |||||||||||  || |||||||||||||| || ||||| |||||||||   ||||||    
T  8601790 agcatcactaagacaactttcaacagtctctatacacttcttaaagaggtccacattgagttgctcaaacttggcccgagtgattgatgaatggaaatca 8601889  T
Q  149 ataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccctctc 219  Q
    ||||| ||| |||  | ||| || |||||  | ||||  ||||||||||||||||||||||||| ||||||    
T  8601890 ataccctcaaataaggaatctatgtcaattgtcgcattggtatcaaatgaaagtgtcctttttgtcctctc 8601960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8545417 - 8545621
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    ||||||||||||||| |   ||| ||||| |||||||||  ||||||||  | ||| || |||||||||||||||||||||||||| || | ||||||||    
T  8545417 acaacatcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattcaattgctcaa 8545516  T
Q  117 acttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccct 216  Q
    |||| || ||||| ||  |||||||||| |||||||| | | ||| |||||| |  |||||  |||| ||||| ||  |||||||||||||||||||| |    
T  8545517 acttggcccgagtgatgcatgaacaaaagtcaataccttgatataaagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgcctt 8545616  T
Q  217 ctcac 221  Q
    |||||    
T  8545617 ctcac 8545621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 29577998 - 29577852
Alignment:
Q  75 tctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatc 174  Q
    |||||||||| |||||||||||||||||||| ||| ||||||| || || |||||||||||||| || || |||||||| | | |||||||||| || ||    
T  29577998 tctccatacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtc 29577899  T
Q  175 aatcatggcatcagtatcaaatgaaagtgtcctttttgccctctcac 221  Q
    |||  |||| ||| | ||| ||||||||| ||| |||||||||||||    
T  29577898 aattgtggcctcaatgtcatatgaaagtgccctctttgccctctcac 29577852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 8581508 - 8581688
Alignment:
Q  41 tccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaac 140  Q
    ||||| |||||||| | ||||||||| | ||| || |||||||||||||||||||||| ||| || | |||||||||||| || ||||| ||||| |||     
T  8581508 tccatcttagcatcggcaagacaactattaacagtgtccatacacttttcaaagaggttcatattcatttgctcaaacttggcccgagttattgacgaat 8581607  T
Q  141 aaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccctctcac 221  Q
    | || |||||||| | |  ||||| ||| |  |||||  |||| ||||| ||| |||||||||||||||| || |||||||    
T  8581608 agaagtcaataccttgatgtatagaatctaggtcaattgtggcctcagtgtcatatgaaagtgtccttttcgctctctcac 8581688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 29582200 - 29582021
Alignment:
Q  42 ccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaaca 141  Q
    |||| |||||||||   ||||||||  ||||  |||||||||| |||||||||||||| ||||| | |||||||||||| || ||||||| || ||| ||    
T  29582200 ccatgttagcatcacgtagacaactcccaacaatctccatacatttttcaaagaggtcgatgttgatttgctcaaacttggcccgagtaactggtgagca 29582101  T
Q  142 aaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccctctcac 221  Q
     ||||||||||| | | | || ||||| |  |||||  |||  ||| | ||||||||||||||||| |||||||||||||    
T  29582100 gaaatcaataccttgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcctctttgccctctcac 29582021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 8559170 - 8559272
Alignment:
Q  75 tctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatc 174  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||| || || ||||||||||| || ||||| || | | |||||||||| || ||    
T  8559170 tctccatacacttttcaaagagatccatattcagttgctcaaacttagcccgtgtgattgatgaacacaagtcaatgccctgacatatagcatctatgtc 8559269  T
Q  175 aat 177  Q
    |||    
T  8559270 aat 8559272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 8667283 - 8667330
Alignment:
Q  97 gtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaa 144  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  8667283 gtccatgttaagttcctcaaatttagcacgagtaattgatgaacaaaa 8667330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 8590422 - 8590534
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||  | |||| | |  ||  |||||| ||||||||||||||| ||| |||||||||| ||||    
T  8590422 acaacatcatctacaatgttcttgtccatcttagcattagccaaacaattcttgacaatctccaaacacttttcaaagagatccctgttaagttgttcaa 8590521  T
Q  117 acttagcacgagt 129  Q
    |||| || |||||    
T  8590522 acttggcccgagt 8590534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 7878117 - 7878014
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    ||||||||||||||| | ||||| |||||  ||||||||||||||||||| |  ||  || ||| ||| |||||||| || ||||| || ||||||||||    
T  7878117 acaacatcatctacattgttcttgtccatcatagcatcagtaagacaactcttgacaatcgccaaacaattttcaaaaagatccatattgagttgctcaa 7878018  T
Q  117 actt 120  Q
    ||||    
T  7878017 actt 7878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 8664901 - 8664978
Alignment:
Q  74 gtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatcaata 151  Q
    |||||||||||||||  ||| |||||||| || | || ||||||| | |||||||| |||||||||||||| ||||||    
T  8664901 gtctccatacactttgtaaaaaggtccatattgatttcctcaaacctcgcacgagttattgatgaacaaaattcaata 8664978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 7877949 - 7877913
Alignment:
Q  185 tcagtatcaaatgaaagtgtcctttttgccctctcac 221  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  7877949 tcagtatcaaatgacagtgtccttttagccctctcac 7877913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 8636673 - 8636597
Alignment:
Q  71 accgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatc 147  Q
    |||||||||| ||||||   |||||||||||| || |||| ||||||| | |||||||| ||  |||||||||||||    
T  8636673 accgtctccacacacttcataaagaggtccatattgagttcctcaaacctcgcacgagttatcaatgaacaaaaatc 8636597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 12528288 - 12528490
Alignment:
Q  17 acaacatcatctacaattttcttatccattttagcatcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaa 116  Q
    |||| |||||||||| |  |||| ||||| |||||||| || | |||||||||||| ||||||||||||||||||||||||||||| || |||||||| |    
T  12528288 acaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattcagttgctcga 12528387  T
Q  117 acttagcacgagtaattgatgaacaaaaatcaataccatcagatatagcatcgatatcaatcatggcatcagtatcaaatgaaagtgtcctttttgccct 216  Q
    |||| || ||||| |||||||| || || ||||| || ||| |||||||||| || |||||  | || || |||||  |||||||||||||||| ||| |    
T  12528388 acttggctcgagtgattgatgagcagaagtcaatgccctcacatatagcatctatgtcaattgtagcctctgtatcgtatgaaagtgtccttttcgcctt 12528487  T
Q  217 ctc 219  Q
    |||    
T  12528488 ctc 12528490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 28219797 - 28219835
Alignment:
Q  112 ctcaaacttagcacgagtaattgatgaacaaaaatcaat 150  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  28219797 ctcaaacttagcacgagtaattgatgaaaagaaatcaat 28219835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 30775071 - 30775169
Alignment:
Q  52 atcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaaatcaat 150  Q
    ||||||||||||||| ||||| ||||  |||||||  | ||| |||||||| || | || |||||||||  ||||||| ||||||||| |||| |||||    
T  30775071 atcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttgacacgagtgattgatgaagaaaagtcaat 30775169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 4678906 - 4678814
Alignment:
Q  52 atcagtaagacaactttcaaccgtctccatacacttttcaaagaggtccatgttaagttgctcaaacttagcacgagtaattgatgaacaaaa 144  Q
    |||| |||||||||| | ||| || ||||||||||  |  || |||||||| |||| || ||||||||| ||||||||||| |||||| ||||    
T  4678906 atcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaa 4678814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University